Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30346
         (903 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6E786 Cluster: ATP synthase F0 subunit 8; n=1; Saprole...    35   2.5  
UniRef50_Q0W4L0 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  
UniRef50_Q0RLJ5 Cluster: Putative uncharacterized protein; n=1; ...    33   10.0 

>UniRef50_Q6E786 Cluster: ATP synthase F0 subunit 8; n=1;
           Saprolegnia ferax|Rep: ATP synthase F0 subunit 8 -
           Saprolegnia ferax
          Length = 126

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -2

Query: 275 FETFAFLLACSL-KDFFKNYILNCQYFLLSNTLIEIKIIALRKNYRGKTYRYRPHVNWLF 99
           F+ F+FL   +    FF N+     YFLL      IK    RK Y       +  +N   
Sbjct: 4   FDQFSFLNQVAFFLFFFFNFYFFISYFLLPTISSNIKF---RKKYINSKINEKTLLNLEI 60

Query: 98  KS*YIFNSNEFKN*SQYLKPELNWNEIKSSIF 3
           K+  I  +N FK+ S Y +  LN N +  +I+
Sbjct: 61  KNKQISYTNLFKDFSNYYETTLNQNILNYNIY 92


>UniRef50_Q0W4L0 Cluster: Putative uncharacterized protein; n=2;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           uncharacterized protein - Uncultured methanogenic
           archaeon RC-I
          Length = 269

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 13/59 (22%), Positives = 35/59 (59%)
 Frame = +2

Query: 509 LISYGFIVYVTCIYITRLFMWFNATLRLIRALYRCN*RSVLFGISINNSMFLIELPIKV 685
           ++S G  ++ T +Y+T + ++FN    ++  ++  N   ++F +S++++MF   L + +
Sbjct: 112 ILSTGLFIFTTLLYVTAIGIYFNDPTEVLPVIF--NILPLMFVLSLSSTMFFYSLTLLI 168


>UniRef50_Q0RLJ5 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 1035

 Score = 33.1 bits (72), Expect = 10.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 872 PNLGSPPGNWPRDIFKLNPPRLMDNSVFLTYG 777
           P +G PPG WP D F+L      D++VF +YG
Sbjct: 265 PPIGGPPGVWP-DPFRLIVQMFDDSTVFSSYG 295


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,790,379
Number of Sequences: 1657284
Number of extensions: 16621893
Number of successful extensions: 29617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29610
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)