Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30346
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    29   3.4  
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 494 WSTL*LISYGFIVYVTCIYITRLFMWFNATLRLIRA 601
           WST   +    IV  +  + TRLFMW  +T  L +A
Sbjct: 172 WSTYQTVILSTIVLFSFAFCTRLFMWSKSTRSLTQA 207


>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
           protein D2013.8a protein.
          Length = 1087

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -2

Query: 851 GNWPRDIFKLNPP-----RLMDNSVFLTYGPPLTFFPSIHP 744
           GNW R  +K  PP      +  NS ++T+ PP+     +HP
Sbjct: 589 GNWQRRTYKWWPPVAHEYNISLNSRYVTFLPPIVINAIVHP 629


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,199,157
Number of Sequences: 27780
Number of extensions: 402119
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)