Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30346
         (903 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ...    35   0.064
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ...    35   0.064
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ...    35   0.064
At1g34270.1 68414.m04253 exostosin family protein contains Pfam ...    29   4.2  
At1g30570.1 68414.m03740 protein kinase family protein contains ...    29   4.2  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    28   9.7  
At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein si...    28   9.7  

>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
           identical to zinc finger protein 3 [Arabidopsis
           thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 354

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -2

Query: 863 GSPPGNWPRDIFKLNPPRLMDNSVFLTYGPPLTFFPSIH-----PIHLYPSICIKNFFRL 699
           G P  +W R  F  NPPRL D S F +      F    H     P+  Y ++  +N F  
Sbjct: 163 GQPSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFY-ALPRENVFP- 220

Query: 698 FKMGQP*LEVQLKTSNC 648
            + GQP  +  +KT +C
Sbjct: 221 ERPGQPECQFYMKTGDC 237


>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
           identical to zinc finger protein 3 [Arabidopsis
           thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 368

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -2

Query: 863 GSPPGNWPRDIFKLNPPRLMDNSVFLTYGPPLTFFPSIH-----PIHLYPSICIKNFFRL 699
           G P  +W R  F  NPPRL D S F +      F    H     P+  Y ++  +N F  
Sbjct: 184 GQPSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFY-ALPRENVFP- 241

Query: 698 FKMGQP*LEVQLKTSNC 648
            + GQP  +  +KT +C
Sbjct: 242 ERPGQPECQFYMKTGDC 258


>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
           identical to zinc finger protein 3 [Arabidopsis
           thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 375

 Score = 35.1 bits (77), Expect = 0.064
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -2

Query: 863 GSPPGNWPRDIFKLNPPRLMDNSVFLTYGPPLTFFPSIH-----PIHLYPSICIKNFFRL 699
           G P  +W R  F  NPPRL D S F +      F    H     P+  Y ++  +N F  
Sbjct: 184 GQPSYSWSRTSFVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFY-ALPRENVFP- 241

Query: 698 FKMGQP*LEVQLKTSNC 648
            + GQP  +  +KT +C
Sbjct: 242 ERPGQPECQFYMKTGDC 258


>At1g34270.1 68414.m04253 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 477

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 293 CDLPSLFETFAFLLACSLKDFFKNYILN 210
           C +PS+F +F+ L   SL  FF N +++
Sbjct: 15  CSIPSIFLSFSLLFVVSLLFFFSNSLIS 42


>At1g30570.1 68414.m03740 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 849

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 583 CRIKPHK*PRYIYTRYINNKTIRY*LESRPYTGRSREC*YDVRIEPGKLFHNVIWMQITS 404
           C +   K  + I+  YINN+T     +   + G   +  Y   ++P    ++V+W+Q+  
Sbjct: 325 CELLVDKQNQRIFRIYINNQTAAGNFDIFAHAGGKNKGIYQDYLDPVSSKNDVLWIQLGP 384

Query: 403 PSSI 392
            SS+
Sbjct: 385 DSSV 388


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 609 VVIKGPFYLVSASTIRCF*LNFQLRLPHFK*PEEVFNTDGRI 734
           +++   FY V  S +R    +F+++L H++ PE++    G +
Sbjct: 102 IIVVPIFYKVEPSDVRYQKNSFEVKLQHYRDPEKILKWKGAL 143


>At1g66250.1 68414.m07521 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase GI:15150341 from [Camellia
           sinensis]
          Length = 505

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -1

Query: 780 WAPFNLLSIYPSNPPLSFHLY*KLLPAI*NGATLIGSSIKNIELLMLIPN 631
           W   N+++ YP+    +  +  ++L ++ N A ++ S+IKN+   +L  N
Sbjct: 103 WVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSAN 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,808
Number of Sequences: 28952
Number of extensions: 370067
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)