Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30345
         (874 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.78 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.4  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   1.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   4.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   7.2  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 635 HFTSXSSSFLGLDRNYGGTRIGRSWALDEDDLVMFLGWSHSRVR 504
           H  S +  F+ + R+Y     G  W LD     +F+G +  ++R
Sbjct: 133 HNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGGTTGKLR 176


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = -1

Query: 496 FAQLVLGEVREHRCVSVQEEHQSIHPHIRHRIQNHLRSSNRAAAKGESTTETESIRRVSA 317
           FA   + ++R    VS   EH   H H    +Q       RAA  G  TT      R S+
Sbjct: 5   FANSYMPDMRNGGVVSA--EHPHQHQHYGAAVQVPQGGRRRAARPGVVTTPRWGCARASS 62

Query: 316 A 314
           A
Sbjct: 63  A 63


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 117 MRAFVV--LACVAMAYGRPEPPVGYSY 191
           MR FV+  +ACV++A  RPE      Y
Sbjct: 1   MRFFVIFFVACVSVALARPEDQYTIKY 27


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 217 ASALPLSAADTELCYWWSFWIPRW 288
           + AL  +  D  +CYW ++   RW
Sbjct: 15  SGALVSATTDKVVCYWGTWSTYRW 38


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 874 PPLLYPPLNSTARVPPPKSFP 812
           PPL+ P L + A  PP  +FP
Sbjct: 201 PPLVSPFLAAMAHRPPHFAFP 221


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 475 EVREHRCVSVQEEHQSIHPHIRHRIQNHLRSSNRAAAKGESTT 347
           E R  +C+SV    + + P ++  ++   + + +   K  STT
Sbjct: 242 ECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNSTT 284


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 45  LIGY*INYHRVS 80
           L+GY INY R+S
Sbjct: 112 LLGYSINYRRIS 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,720
Number of Sequences: 336
Number of extensions: 4773
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)