Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30345
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   3.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   6.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.1  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   8.1  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 839  PSPPPKILPAEFFRRIPPAKASRQIHHQISFGV 741
            P+PPP I  ++  R+  P K  RQI  Q++ G+
Sbjct: 1245 PNPPPIIGESKSTRKPRPTKRQRQIMKQVAEGL 1277


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 859 PPL---NSTARVPPPKSFPRNSSAGSHPQRPPAK 767
           PP+   +S + +PPP   PR+++AGS P  P  +
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR 358



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
           PP   P L++ A  PPP   P N +  S P  PP
Sbjct: 241 PPERVPSLSAPA--PPPIPPPSNGTVSSPPNSPP 272



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 816 SRGILPPDPTRKGLPPNTPP 757
           SR   PP PT   LPP+ PP
Sbjct: 410 SRTSTPPVPTPPSLPPSAPP 429



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
           PPL      ST  VP P S P ++     P  PP+
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 850 NSTARVPPPKSFPRNSSAGSHPQRPPAKY 764
           +ST ++PPP S+P  ++A  + +R  A Y
Sbjct: 121 SSTEKLPPPPSYPGPNTAHKNVERVLAMY 149


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 607 KNEEEXLVKCAWLKNPKKKPWIFYSNFRNP--I*PLKKREFTSSKY 738
           K  EE LV    +   KK+ WI+++N ++P  +  L+++ FT S++
Sbjct: 431 KRIEERLVNENIIYKEKKRKWIYFTN-KSPEMVSYLREKYFTPSRW 475


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 839  PSPPPKILPAEFFRRIPPAKASRQIHHQISFG 744
            P PPP I  +   R+  P K  R+I  Q+  G
Sbjct: 1320 PQPPPFIGESRSNRKPRPTKRQREIMEQVESG 1351


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 810 GILPPDPTRKGLPPNTPPDFLWGLIF 733
           G LP       +  N PPD+ WG+++
Sbjct: 410 GELPEAELHFSVIKNLPPDYAWGMLY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,708
Number of Sequences: 5004
Number of extensions: 78697
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)