Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30345
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 34 0.13
05_03_0474 + 14481063-14481403,14481597-14481710,14483428-144836... 32 0.69
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725 31 0.91
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 31 1.6
10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630 30 2.8
11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908 29 3.7
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 29 3.7
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 29 3.7
02_05_0796 + 31800256-31800528,31800635-31800758,31802642-318027... 29 4.9
05_03_0458 + 14280953-14281866,14281964-14282912 29 6.4
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 6.4
03_02_0576 - 9587698-9588636 29 6.4
02_05_1162 - 34593101-34594624 29 6.4
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 29 6.4
01_01_0083 + 631196-631675 29 6.4
09_04_0180 + 15367737-15367755,15368874-15369739 28 8.5
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 28 8.5
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTR 755
P + P NST RV PP S PR+ ++ S P+R T+R
Sbjct: 181 PHVFLPSYNSTPRVTPPDSPPRSFASISPPRRHSISITSR 220
>05_03_0474 +
14481063-14481403,14481597-14481710,14483428-14483676,
14485844-14486225
Length = 361
Score = 31.9 bits (69), Expect = 0.69
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 872 PPFIPTFKFHRPSPPPKILPAEFFRRIP-PAKASRQIHHQISFGV*YFDEVNSRFLRG 702
P +P F PS LPA F RRIP PA A Q HQ + Y +S LRG
Sbjct: 37 PRSLPDPPFQAPSRDRLTLPASF-RRIPFPAAAEHQHQHQQQYQ--YLGRSSSSALRG 91
>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
Length = 523
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRFPLG 743
P L A + PR S G P RPP+ +T +PLG
Sbjct: 35 PALIRAAAAASSPASPRGHSGGRKPARPPSLQSTLWPLG 73
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 862 YPPLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
YPP R PPP++ P + G +PQ+PP +
Sbjct: 359 YPP-----RGPPPQNMPYSQPYGGYPQQPPPR 385
>10_05_0064 + 8712503-8712507,8714248-8714358,8715018-8715630
Length = 242
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 839 PSPPPKILPAEFFRRIPPAKASRQIHHQISF 747
PSPP PA F PPAKA ++HH + F
Sbjct: 91 PSPPAPT-PAHVFTEPPPAKA--EVHHAVLF 118
>11_06_0327 - 22392021-22392316,22393879-22394389,22394843-22394908
Length = 290
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 421 PHIRHRIQNHLRSSNRAAAKGESTTETESIRRVSAAKGNAASRKAT 284
P+ + + HL+S+ A +GE E I+R+ A KG + T
Sbjct: 198 PNHPYELSRHLQSTPGKARQGELQRPIERIKRMEAEKGTTIVKSVT 243
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 745 PKEIWWCIWREAFAGGIRRKNSAGRILGGG---LGRWNLKVGIKGG 873
P E+ + +WRE F G N+ R LG W GI+GG
Sbjct: 477 PMELCFSMWRECFVDGPDILNNISRALGKAKLKFSSWEELKGIQGG 522
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -1
Query: 874 PPLLYPPLNSTA----RVPPPKSFPRNSSAGSHPQRPPAKYTTRFP 749
PP PP + A R P P+ R G++ PPA Y R P
Sbjct: 173 PPPPQPPASVVASLAARPPQPRQLQRRPQDGAYRALPPASYPVRTP 218
>02_05_0796 +
31800256-31800528,31800635-31800758,31802642-31802771,
31804336-31804414,31804848-31805133,31805273-31805385
Length = 334
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 872 PPFI--PTFKFHRPS-PPPKILPAEFFRRIPPAKASRQ 768
PPFI P +F S PP LP +F ++PP SRQ
Sbjct: 255 PPFIQQPALQFDGGSFPPGPSLPPDFRLQLPPHALSRQ 292
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/42 (45%), Positives = 19/42 (45%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRFP 749
PPL PPL T PPP P S SHP PP T P
Sbjct: 66 PPL--PPLQPT---PPPLP-PTTLSCSSHPTPPPPPSPTTSP 101
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
P PPL ++ PPP PRNS + P +PP++
Sbjct: 67 PSATPPLAASPPPPPPPPPPRNSPS---PPKPPSQ 98
>03_02_0576 - 9587698-9588636
Length = 312
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 856 PLNSTARVPPPKSFP--RNSSAGSHP 785
P + AR PPP +FP R+SSA S P
Sbjct: 236 PAAAAARPPPPPAFPTRRSSSAASDP 261
>02_05_1162 - 34593101-34594624
Length = 507
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQR-PPAKYTTRFP 749
PP +TA PPP + PRN S S + PPA T P
Sbjct: 317 PPAPATA-APPPAALPRNGSDDSLTRAYPPATVTPTPP 353
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 537 NVSGVEPQQGTRKSLLNWFWGRYVNIDVFLYKRSTR 430
N+S V P++G S N F+ NIDV L++ TR
Sbjct: 121 NISWVSPRKGVTISQRNTFYIIGCNIDVTLFEYGTR 156
>01_01_0083 + 631196-631675
Length = 159
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRFP 749
P LL PP T PPP S P SS S+P PP+ ++ P
Sbjct: 31 PCLLPPPTPVTTDCPPPPSTP--SSGYSYP--PPSSSSSNTP 68
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 839 PSPPPKILPAEFF-RRIPPAKAS 774
PSPPP+++P F +R+ P AS
Sbjct: 190 PSPPPRLIPRSFLAKRLSPTGAS 212
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFP-RNSSAGSHPQRPP 773
PPL S AR+P P++ P R SSA P R P
Sbjct: 73 PPLRS-ARLPSPEAEPSRRSSAAEKPSRFP 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,257,865
Number of Sequences: 37544
Number of extensions: 626709
Number of successful extensions: 3119
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3066
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -