Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30345
(874 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 29 3.8
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 29 5.0
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081) 29 5.0
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_46437| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08) 28 8.7
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 190 TPLPEVTQEA-SALPLSAADTELCYWWS---FWIPRWPFWRQHFP 312
TPLP T + + P DT + YW + +W P P+W + P
Sbjct: 29 TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLP 73
>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2409
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
PP LN +PPP S P SS GS P PP
Sbjct: 1734 PPPRLAILNWADLLPPPPSHPPPSSLGSPPPSPP 1767
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 872 PPFIPTFKFHRPSPPPKILPAEFFRRIPPAKASRQIHH 759
PPF P F+R PPP+ +P +R+ P++ Q+H+
Sbjct: 485 PPFGPPPPFYRGPPPPRGMPPPPRQRM-PSQGPPQVHY 521
>SB_43690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 780
Score = 27.9 bits (59), Expect(2) = 2.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFP 812
PPL PPL+ST PPP P
Sbjct: 707 PPLSAPPLSSTLGPPPPAPPP 727
Score = 21.0 bits (42), Expect(2) = 2.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -1
Query: 832 PPPKSFPRNSSAGSHPQRPPA 770
PPP + P + P PPA
Sbjct: 758 PPPPAVPGEGARPPPPPPPPA 778
>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +3
Query: 9 LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 170
+SH + + + +IGY +YHRV S I L +SS H++ F+ L G P
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696
Query: 171 PPVGYSYSAPR 203
P +GY S R
Sbjct: 697 PIIGYPTSYHR 707
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 466 EHRCVS-VQEEHQSIHPHIRHRIQNHLRSSNRAAAKGESTTETESIRRVS 320
EH+ +S +QE++ S IRH QN +S R+ + + + IR S
Sbjct: 184 EHKKISAIQEKNPSHKSKIRHTSQNIRHTSQRSVTQVKDPSHNSEIRHTS 233
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
PP PP A +PPP P+ AG P PP
Sbjct: 712 PPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPP 745
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRFPL 746
P++ PP+ S + PK R + + PQRP +K P+
Sbjct: 105 PIVTPPIPSPSESSSPKRPNRKTKRQTPPQRPKSKPVCELPV 146
>SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)
Length = 524
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
PP+ T R PP K PR A P+R P
Sbjct: 232 PPVPQTKRKPPAKLPPRQPVAEPEPERQP 260
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 472 VREHRCVSVQEEHQSIHPHIRHRIQNHLRSSNRAAAKGESTTETESIRRVSAAKGNAASR 293
+RE ++ +EEH I ++ L + R AKG+ T + RR+ +K R
Sbjct: 271 LREEIELTKKEEHDYRRNEILREMEGKLDAVRRLQAKGDPTGDKGQARRLKVSKPRDYRR 330
Query: 292 K 290
K
Sbjct: 331 K 331
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
PP PP +++ VPPP+ + +HP PP +
Sbjct: 1072 PPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPPPR 1107
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
PP PP+ + P P +SAG+ Q+PP
Sbjct: 709 PPPSTPPVQQSGAPGSPAGSPSGTSAGNPQQQPP 742
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 383 ASEVILDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLV 508
A +V + D++V L LL NTSMF+ QN +SK ++
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVI 304
>SB_46437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +3
Query: 510 PAVAPPQKHYKIIFIKGPTS------PNPSAPIIPIQTQKRRGXTRKMCLVKKP 653
PA P +H + +K TS P P++P Q QK RK C ++ P
Sbjct: 188 PACTLPYEHEPLNILKSSTSYRDIRTAEPVLPVLPEQYQKSTVERRKTCGLRPP 241
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 466 HVPPPEPVEQRLPRTLLWLHPRNITRSSSS 555
H PPP P + +T L L PR++ ++SS+
Sbjct: 259 HPPPPPPGSRGRAKTQLQLIPRSLQKTSST 288
>SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)
Length = 318
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 705 PQKTGVYFIKILNPKGNLVVYLAGGLCGWDPAEEFRGK 818
PQK G K+L N+ + L LC +DP E K
Sbjct: 145 PQKKGTGINKLLPHASNMCIELIELLCTYDPDERISAK 182
>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -1
Query: 412 RHRIQNHLRSSNRAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSK 254
R I+N +RS AA+ +++TETE R+ A S K+ GS+ ++ K
Sbjct: 663 RQLIKN-MRSLESKAAEAKASTETEKPERLHEAAKCPTSTKSKEGSKKSSPKK 714
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,788,766
Number of Sequences: 59808
Number of extensions: 594092
Number of successful extensions: 2245
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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