Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30345
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 31 1.4
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 30 1.9
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 30 1.9
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.7
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 29 5.7
Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 7.6
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 28 7.6
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 28 7.6
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 28 7.6
AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical ... 28 7.6
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 28 7.6
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei... 28 7.6
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot... 28 7.6
>U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical
protein F35C8.5 protein.
Length = 300
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 130 WYSPVWLWPMAALNLQW--DTATPL--PEVTQEASALPLSAADTELCYWWSFWIPRWPFW 297
W +W++PMA + L W DT P+ P V + S L + + Y+W +I W
Sbjct: 98 WNQLLWIYPMALVQLIWVPDTELPILAPTVFEMLSQLAIFFLAFDFTYFWFHYINHKVKW 157
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
P ++ PP+ PPP+ P S+ G PQ PP
Sbjct: 1008 PVIMGPPIIRPFGAPPPQFIPIQSNYGRPPQFPP 1041
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
P ++ PP+ PPP+ P S+ G PQ PP
Sbjct: 1008 PVIMGPPIIRPFGAPPPQFIPIQSNYGRPPQFPP 1041
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSS-AGSHPQRPPAKYTTRFPL 746
PL PP T PPPK R S P RPPA PL
Sbjct: 81 PLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPL 123
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSS-AGSHPQRPPAKYTTRFPL 746
PL PP T PPPK R S P RPPA PL
Sbjct: 303 PLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEPVGIPL 345
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 647 KTLKRNPGFFIPISGTQFSPSKNGSLLHQNIKPQR 751
KTL+ G FI + ++ PSKN SLL N P+R
Sbjct: 863 KTLQLTAGHFIYATECRYLPSKNSSLL--NSTPER 895
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
F43C1.1 protein.
Length = 1036
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 872 PPFIPTFKFHRPSPPPKILPA 810
PP IP + PSPPP LP+
Sbjct: 948 PPPIPAIRHRTPSPPPPPLPS 968
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
PP S PPPK P + +GS P P A
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAA 261
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
PP S PPPK P + +GS P P A
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAA 282
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
PP S PPPK P + +GS P P A
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAA 267
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAG 794
PP TAR PP S RNS AG
Sbjct: 351 PPAPQTARAPPETSPTRNSGAG 372
>Z93390-7|CAB07677.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 863 IPTFKFHRPSPPPKILPAEFFRRIPPAKASRQIHHQI 753
IPT F +P P K+ E F P SR +H I
Sbjct: 432 IPTQLFKKPHPQKKVNILEGFSNTPGVTTSRLFYHAI 468
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 856 PLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
P T P PK P+++ A P+ PPA+
Sbjct: 49 PARPTVAKPAPKPTPKSAPAPKSPKSPPAR 78
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKY 764
PP YP A PP S+P+N A P PPA Y
Sbjct: 68 PPAPYPQHAVPAPAPPLASYPQN--AVPVPAPPPAPY 102
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 856 PLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRF 752
PL+ R P SF NS SHP R AK ++
Sbjct: 504 PLSVNVRNQSPASFSVNSCQQSHPSRTSAKLEIQY 538
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 856 PLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRF 752
PL+ R P SF NS SHP R AK ++
Sbjct: 521 PLSVNVRNQSPASFSVNSCQQSHPSRTSAKLEIQY 555
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 856 PLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRF 752
PL+ R P SF NS SHP R AK ++
Sbjct: 633 PLSVNVRNQSPASFSVNSCQQSHPSRTSAKLEIQY 667
>AL032675-2|CAA21780.1| 931|Caenorhabditis elegans Hypothetical
protein VT23B5.2 protein.
Length = 931
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 863 IPTFKFHRPSPPPKILPAEFFRRIPPAKASRQIHHQI 753
IPT F +P P K+ E F P SR +H I
Sbjct: 432 IPTQLFKKPHPQKKVNILEGFSNTPGVTTSRLFYHAI 468
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 856 PLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
P T P PK P+++ A P+ PPA+
Sbjct: 49 PARPTVAKPAPKPTPKSAPAPKSPKSPPAR 78
>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
protein.
Length = 1908
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 417 CGWILWCSSCTETHLCSRTSPRTS 488
CGW + + CT+ C R P TS
Sbjct: 515 CGWCVSNNHCTQEESCEREVPHTS 538
>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
protein.
Length = 1951
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 417 CGWILWCSSCTETHLCSRTSPRTS 488
CGW + + CT+ C R P TS
Sbjct: 521 CGWCVSNNHCTQEESCEREVPHTS 544
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,896,457
Number of Sequences: 27780
Number of extensions: 461536
Number of successful extensions: 1946
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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