Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30345
(874 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62780.1 68416.m07053 C2 domain-containing protein contains s... 31 1.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.8
At1g31410.1 68414.m03847 putrescine-binding periplasmic protein-... 30 1.8
At1g61080.1 68414.m06877 proline-rich family protein 30 2.3
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 29 3.1
At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family... 29 5.4
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 5.4
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 29 5.4
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 29 5.4
At1g17800.1 68414.m02203 plastocyanin-like domain-containing pro... 29 5.4
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 28 7.1
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 7.1
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 9.4
At4g23882.1 68417.m03434 heavy-metal-associated domain-containin... 28 9.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 9.4
At1g49270.1 68414.m05524 protein kinase family protein contains ... 28 9.4
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 9.4
At1g15840.1 68414.m01901 expressed protein 28 9.4
>At3g62780.1 68416.m07053 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 298
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYTTRFP 749
P +YPPL + + PP FP + P PP Y + FP
Sbjct: 229 PPIYPPL-AQPEILPPVCFPGLYPPSNMPGSPPTMYQSIFP 268
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSSAGSHP-QRPPAKYTTRFPLGFN 737
P+ YPP+ + PPP S P + P Q PP +Y + P G N
Sbjct: 738 PVYYPPVTQS---PPPPSTPVEYHPPASPNQSPPPEYQSPPPKGCN 780
>At1g31410.1 68414.m03847 putrescine-binding periplasmic
protein-related similar to Chain A, Putrescine Receptor
(Potf) (GI:3891734) [Escherichia coli]; similar to Chain
C, Putrescine Receptor (Potf) (GI:3891736) [Escherichia
coli]; similar to Putrescine-binding periplasmic protein
precursor. (Swiss-Prot:P31133) [Escherichia coli]
Length = 524
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +1
Query: 646 KNPKKKPWIFYSNFRNPI*PLKKREFTSSKY*TPKEIWWCIWREAFAGGIRRKNSAGRIL 825
K P + W + + KK +F + K P E W +WR AG I NS ++
Sbjct: 228 KAPDGETWAVPYRWGTMVIAYKKSKFQNYKL-APIEDWADLWRPELAGRIAMVNSPREVV 286
Query: 826 GGGL 837
G L
Sbjct: 287 GAVL 290
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
PP PP+ + A PPP + S G P PP
Sbjct: 563 PPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPPP 596
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
PP PPL +T PPP P ++ P PP
Sbjct: 509 PPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPP 542
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
PP PP T PPP S P + S+ PP++
Sbjct: 52 PPSPPPPSTPTTACPPPPSPPSSGGGSSYYYPPPSQ 87
>At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family
protein similar to extensin [Catharanthus roseus]
gi|1486263|dbj|BAA13175; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 96
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSH----PQRPPAKYTTRFP 749
PP+ PP++ PPP P S A ++ P PP+KY +P
Sbjct: 40 PPVYSPPISPPPPPPPP---PPQSHAAAYKRYSPPPPPSKYGRVYP 82
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
PP PP+ A +PPP P A P PPA
Sbjct: 27 PPPPPPPMRRRAPLPPPPPPPMRRRAPLPPPPPPA 61
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family protein
contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 487 LVLGEVREHRCVSVQEEHQSIHPHIR---HRIQNHLRSSNRAAAKGES 353
L+ GE+R +RC S + H+R + +HL +NR A+ E+
Sbjct: 865 LLKGELRCNRCRSAHPNIPKLKSHVRSCHSQFPDHLLQNNRLVARAET 912
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
PP+ PP ST PPP+ F + PPA
Sbjct: 105 PPIDSPPPESTNSPPPPEVFEPPPPPADEDESPPA 139
>At1g17800.1 68414.m02203 plastocyanin-like domain-containing
protein contains plastocyanin-like domain Pfam:PF02298;
similar to basic blue protein GI:6688810 from [Medicago
sativa]
Length = 140
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 765 YLAGGLCGWDPAEEF----RGKDFGGGTRAVEFKGGYKR 869
Y+ GG GWDP RGK F G +EFK Y+R
Sbjct: 41 YIVGGDDGWDPVVPMDTWARGKTFYAGD-ILEFKYDYQR 78
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 851 KFHRPSPPPKILPAEFFRRIPPAK 780
+FH P PPP P E+++ PP K
Sbjct: 326 EFHPPPPPPPPPPVEYYKS-PPTK 348
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 859 PPLNSTARVPPP-KSFPRNSSAGSHPQRPPAKYTTRFP 749
PP NST PPP S P ++ S P P+ +T P
Sbjct: 18 PPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPP 55
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSH 788
PP YPP A P +PR S +G H
Sbjct: 71 PPAGYPPAGYPAHGYPSHGYPRPSHSGHH 99
>At4g23882.1 68417.m03434 heavy-metal-associated domain-containing
protein
Length = 284
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPAKYT 761
PP++YPP + P +P S P RPP YT
Sbjct: 222 PPMVYPPPQAVPGFTTPIPYPPPS---FFPGRPPPPYT 256
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 859 PPLNSTARVPPPKSFPRNSSAGSHPQRPPAK 767
PP +A PPP P+ A P PP K
Sbjct: 386 PPPPPSAAAPPPPPPPKKGPAAPPPPPPPGK 416
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 871 PLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPP 773
P + PP PPP P NSS GS PP
Sbjct: 50 PDIAPPPQQQQESPPPP-LPENSSDGSSSSSPP 81
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 874 PPLLYPPLNSTARVPPPKSFPRNSSAGSHPQRPPA 770
PP L P + +PPPK P + S H PPA
Sbjct: 154 PPSLPAPDPPSNPLPPPKLVPPSHSPPRHLPSPPA 188
>At1g15840.1 68414.m01901 expressed protein
Length = 126
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 787 GGIRRKNSAGRILG--GGLGRWNLKVGIKG 870
GG RR + GR LG GG G WN + G G
Sbjct: 89 GGGRRGDGLGRGLGRGGGRGGWNGRKGFSG 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,981
Number of Sequences: 28952
Number of extensions: 464376
Number of successful extensions: 2034
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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