Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30344
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.80 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    24   1.8  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   2.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   4.3  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   4.3  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   4.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   7.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   7.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   7.4  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   7.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.4  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   7.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   7.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   7.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   7.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   9.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 348 DWVGEDGAGHFVKMVHN 398
           DW  EDG   F+  +HN
Sbjct: 221 DWTKEDGTDKFMSHIHN 237


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 532 RSRRNHSSLCPLVEYFSH 479
           R R+N++S+C LV+ F++
Sbjct: 221 RVRKNYNSICELVDAFNN 238



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 335 IFSFSAYGLENFFY 294
           +++ S+YG ENF Y
Sbjct: 39  LYAHSSYGRENFIY 52


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 440 HLMKDVIGIEQDEMAKVFDEW 502
           HL+   +G+  D +  V D+W
Sbjct: 52  HLLYAFVGLRDDGVVSVLDDW 72


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 169 SVCLSIVNYHHQL*YH 122
           S+ + +V+YHHQL  H
Sbjct: 127 SLVIKLVDYHHQLLGH 142


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 440 HLMKDVIGIEQDEMAKVFDEW 502
           H++   +G+ +D    V D+W
Sbjct: 53  HILYAFVGLREDGSVSVLDDW 73


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 440 HLMKDVIGIEQDEMAKVFDEW 502
           H++   +G+ +D    V D+W
Sbjct: 53  HILYAFVGLREDGSVSVLDDW 73


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 849 VFLGEKGPPPRVFGKGQFLPPG 784
           V +  K PP   + +  ++PPG
Sbjct: 25  VVVDPKFPPSEEYNQNSYIPPG 46


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 849 VFLGEKGPPPRVFGKGQFLPPG 784
           V +  K PP   + +  ++PPG
Sbjct: 25  VVVDPKFPPSEEYNQNSYIPPG 46


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 619 YPSVRPYPEFGV--ANISRRSLGISKYP 542
           Y    PYP FGV  A I  ++ G++  P
Sbjct: 173 YARYHPYPNFGVPPAGIPLQNPGLNLNP 200


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +2

Query: 557 SKTPTGNICYPKFGIRPDRRVPEKLTGH 640
           +K P   +C P  G+     +P+++ G+
Sbjct: 119 TKAPLECMCRPCTGVEESAVIPQEIAGY 146


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = -3

Query: 682 GFSGHRVPGIPGALMPGQFFRYPSVRPYPEFGV 584
           G   H   G P    P Q   YP   PY    +
Sbjct: 59  GIPPHHYGGPPSGGQPPQGMPYPRFPPYDRMDI 91


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 585 TPNSGYGRTEGYRKN*PGINAPGIP 659
           TP +GY     +    PG+N P  P
Sbjct: 92  TPPAGYPMDVPHGMGSPGVNVPEYP 116


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 849 VFLGEKGPPPRVFGKGQFLPPG 784
           V +  K PP   + +  ++PPG
Sbjct: 25  VVVDPKFPPSEEYNQNSYIPPG 46


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 849 VFLGEKGPPPRVFGKGQFLPPG 784
           V +  K PP   + +  ++PPG
Sbjct: 25  VVVDPKFPPSEEYNQNSYIPPG 46


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 585 TPNSGYGRTEGYRKN*PGINAPGIP 659
           TP +GY     +    PG+N P  P
Sbjct: 92  TPPAGYPMDVPHGMGSPGVNVPEYP 116


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 205 KVFLSLTTLYTISVCLSIVNYHHQL*YHL 119
           KV +      T   C  I  Y H L YHL
Sbjct: 222 KVHIREDKRLTCPKCPFITEYKHHLEYHL 250


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  AVDEFVKKLIPLLSKGDIIID 138
           A+DE   KL PL  + D+I D
Sbjct: 64  AIDEETYKLTPLNEQFDVIKD 84


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 758 LSGIPGPNFPGGKNCPFPKTLGGGP 832
           LSG+     PGG   P P T    P
Sbjct: 687 LSGLSSLTSPGGMVLPSPSTSVASP 711


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 758 LSGIPGPNFPGGKNCPFPKTLGGGP 832
           LSG+     PGG   P P T    P
Sbjct: 579 LSGLSSLTSPGGMVLPSPSTSVASP 603


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,354
Number of Sequences: 336
Number of extensions: 5928
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)