Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30344
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...   117   3e-27
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   4.7  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   6.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   8.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   8.3  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score =  117 bits (281), Expect = 3e-27
 Identities = 55/85 (64%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCK 180
           A SL++ VSKLK+PR  +LLVKAG  VD  ++ L PLL KGDII+DGGNS Y DT + C+
Sbjct: 58  AHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCE 117

Query: 181 ELSGTGILYVGMGVSGGEDGARYGP 255
           EL+  GIL+VG GVSGGE+GARYGP
Sbjct: 118 ELAKKGILFVGSGVSGGEEGARYGP 142



 Score =  117 bits (281), Expect = 3e-27
 Identities = 50/61 (81%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 SLMPGGHPAAWPHIKEIFQAICAKA-KDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLIC 431
           SLMPGG+PAAWP IK IFQ + AKA  +EPCCDWVGE GAGH+VKMVHNGIEYGDMQLIC
Sbjct: 143 SLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAGHYVKMVHNGIEYGDMQLIC 202

Query: 432 E 434
           E
Sbjct: 203 E 203



 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 37/70 (52%), Positives = 44/70 (62%)
 Frame = +1

Query: 517 DSFLIEITRGILKFQDSDGKYLLPQIRDTAGQKGTGKIDRASTPLEYRGPCDR*IRENRF 696
           DSFLIEITR +L+++  DGK L+ +I D AGQKGTGK   A   LE   P    I E  F
Sbjct: 232 DSFLIEITRDVLRYKADDGKPLVEKILDAAGQKGTGKW-TAQNALEMGTPVSL-ITEAVF 289

Query: 697 SHRCLPGSLK 726
           + RCL  SLK
Sbjct: 290 A-RCL-SSLK 297



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 TYHLMKDVIGIEQDEMAKVFDEW 502
           TY +MK  +G+  DE+A VF++W
Sbjct: 204 TYDIMKRGLGMSCDEIADVFEKW 226


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 348 DWVGEDGAGHFVKMVHNGIEYGDMQLICE 434
           D+VG DG GH+      G +   +QL CE
Sbjct: 769 DFVGVDGVGHYPSKASEGRDRASIQL-CE 796


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 486 KYSTSGQSEL*FLLDRNHQGYFEIPRLRRE 575
           +  T+G SE  FLL+R+H  +F++   R E
Sbjct: 218 RIKTTGISEETFLLNRHHYRFFDVGGQRSE 247


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 694 NGFPGFSGHRVP--GIPGALMPGQFFRYPSVRPYPEFG 587
           N  P ++   +P  GIP A MPG    YP   P P+ G
Sbjct: 123 NPLPSYNTASLPNAGIPAA-MPGMPSGYPGTVPIPQGG 159


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 143 PPSIIISPLLKSGISFFTNSSTANPAFTKRT 51
           PPS    PL  S  S  TNSS A+    +RT
Sbjct: 325 PPSSATGPLYHSPQSSLTNSSVASADVQERT 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,776
Number of Sequences: 5004
Number of extensions: 92473
Number of successful extensions: 234
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)