Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30344
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0333 + 16474011-16475478,16475622-16475641                       95   9e-20
06_01_0080 + 644021-645463                                             86   3e-17
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601...    32   0.70 
03_05_0556 - 25564025-25564274,25565244-25565470                       29   3.8  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   6.6  
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883...    28   8.7  

>11_04_0333 + 16474011-16475478,16475622-16475641
          Length = 495

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = +1

Query: 22  VSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGI 201
           V  L RPR +VLLV+AG AVD  +  L+P L  GD I+DGGN  Y +T++  +E +  GI
Sbjct: 82  VLSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGI 141

Query: 202 LYVGMGVSGGEDGARYGP 255
           LY+GMGVSGGE+GAR GP
Sbjct: 142 LYLGMGVSGGEEGARNGP 159



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = +3

Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLICE 434
           SLMPGGH  A+ +I++I +   A+ +D  C  +VG  GAG+FVKMVHNGIEYGDMQLI E
Sbjct: 160 SLMPGGHIDAYNNIRDILEKAAAQTEDGACVTFVGPGGAGNFVKMVHNGIEYGDMQLIAE 219


>06_01_0080 + 644021-645463
          Length = 480

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 39/78 (50%), Positives = 56/78 (71%)
 Frame = +1

Query: 22  VSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGI 201
           V+ +++PR +++LVKAG  VD+ +  L   L +GD IIDGGN  Y +T++  K +   G+
Sbjct: 64  VNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERGL 123

Query: 202 LYVGMGVSGGEDGARYGP 255
           LY+GMGVSGGE+GAR GP
Sbjct: 124 LYLGMGVSGGEEGARNGP 141



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDE-PCCDWVGEDGAGHFVKMVHNGIEYGDMQLIC 431
           SLMPGG   A+ +I++I   + A+  D  PC  ++G+ G+G+FVKMVHNGIEYGDMQLI 
Sbjct: 142 SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIS 201

Query: 432 E 434
           E
Sbjct: 202 E 202



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 520 SFLIEITRGILKFQDSDGK-YLLPQIRDTAGQKGTGK 627
           SFLIEIT  I   +D  G  +L+ ++ D  G KGTGK
Sbjct: 232 SFLIEITADIFSIKDDQGSGHLVDKVLDKTGMKGTGK 268


>09_04_0529 +
           18356964-18358307,18359829-18359944,18360036-18360133,
           18360234-18360418
          Length = 580

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 709 DNGEKNGFPGFSGHRVPGIPGALMPGQFFRYPSVRPYPEFGVA 581
           D+GE    P    H++P + GA +P    R+P   P P F ++
Sbjct: 3   DDGE-TPMPSLELHKLPTLAGAAIPNPIARHPLYHPSPSFFIS 44


>03_05_0556 - 25564025-25564274,25565244-25565470
          Length = 158

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 185 NSLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTAN-PAFTKRTIFLG 39
           NS H     +   LPP     PLL   + FFT+S++   P F KR +  G
Sbjct: 28  NSSHPCKADEGSRLPPGSRGLPLLGESLEFFTSSTSLELPVFFKRRLNRG 77


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 585  TPNSGYGRTEGYRKN*PGINAPGIPGTL*PLNPGKPFFSPLSP 713
            TP+SG G +       PG   PG   +  P NP  PF+SP SP
Sbjct: 1585 TPSSGGGYSPSPPVCTPG---PGSFTSSSPYNPVSPFYSPASP 1624


>03_06_0273 +
           32787021-32787434,32788096-32788221,32788305-32788378,
           32788468-32788537,32788622-32788677,32788762-32788833,
           32788945-32789039,32789196-32789262,32789359-32789488,
           32789578-32789793,32789887-32790017,32790719-32790893,
           32790977-32791067,32792151-32792308,32792763-32792951,
           32793066-32793125
          Length = 707

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 139 GGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGP 255
           G + +Y+  +K  K   G G +YVG  VSGG  G+R GP
Sbjct: 142 GNSPEYITDRKLGK--GGFGQVYVGRRVSGG--GSRTGP 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,876,396
Number of Sequences: 37544
Number of extensions: 663150
Number of successful extensions: 1713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)