Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30344
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                       111   1e-24
SB_36462| Best HMM Match : efhand (HMM E-Value=5.8e-09)                29   3.8  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         29   6.7  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.7  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score =  111 bits (266), Expect = 1e-24
 Identities = 47/60 (78%), Positives = 51/60 (85%)
 Frame = +3

Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLICE 434
           SLMPGG   AWPHIK IFQAI AKA ++PCCDWVG DG+GHFVKMVHNGIEYGDMQ+  E
Sbjct: 186 SLMPGGSEKAWPHIKPIFQAIAAKAGNDPCCDWVGGDGSGHFVKMVHNGIEYGDMQVFDE 245



 Score = 80.2 bits (189), Expect(2) = 1e-23
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +1

Query: 103 IPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGP 255
           +PLL  GDIIIDGGNS+Y D+ + CK L   G+L+VG GVSGGE+GARYGP
Sbjct: 135 VPLLESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP 185



 Score = 48.0 bits (109), Expect(2) = 1e-23
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +1

Query: 1   ATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLI 105
           A SL +MVSKLK+PR++++LVKAG AVD F+  L+
Sbjct: 68  AHSLQEMVSKLKKPRRVMILVKAGSAVDAFIDHLV 102



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +1

Query: 505 KANYDSFLIEITRGILKFQDSDGKYLLPQIRDTAGQ 612
           K   DSFLIEIT+ I+ ++D+DG  L+ +IRD+AGQ
Sbjct: 248 KGELDSFLIEITKNIMAYKDADGSPLVEKIRDSAGQ 283


>SB_36462| Best HMM Match : efhand (HMM E-Value=5.8e-09)
          Length = 402

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 840 GEKGPPPRVFGKGQF-LPPGKFGPGIPESIW 751
           G+ GPPP  +  GQF  P G   PG+  S+W
Sbjct: 75  GQYGPPPSAY-PGQFSAPTGGPPPGVDPSLW 104


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 421 CISPYSIPLCTILTKWPAPSSPTQSQHGSSLALAHMAWKISFICGHAAGCPPG 263
           C+  Y  P+C+ +   P PS    + H  SL    +  K   +C H   CP G
Sbjct: 279 CVQVYQ-PVCSAVMCKPLPSVNIGNYHPPSLNCDSVEQKFDQVCSHR--CPSG 328


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 697  KNGFPGFSGHRVPGIPGALMP-GQFFRYPSVRPY-PEFGVANIS 572
            K G+P  S H   G P A MP G +   P V PY P  G A+ S
Sbjct: 2523 KGGYPYDSRHMGAGYPHASMPYGAYGGMPYVNPYMPNNGQASKS 2566


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 869 PGAKRNGFS*GKRAPPQGFSEKGNFYPPGNLGPGSR 762
           P  + NG   G R PP G+ +     P    GPGSR
Sbjct: 275 PPNQYNGNYQGGRPPPHGYGDPNGRPPVPRQGPGSR 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,046,471
Number of Sequences: 59808
Number of extensions: 719166
Number of successful extensions: 1786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)