Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30344
(891 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 91 1e-18
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 91 1e-18
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 89 5e-18
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 89 5e-18
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 87 1e-17
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 2.4
At1g07850.1 68414.m00852 fringe-related protein + weak similarit... 29 4.1
At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.2
At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put... 28 9.6
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 90.6 bits (215), Expect = 1e-18
Identities = 41/81 (50%), Positives = 57/81 (70%)
Frame = +1
Query: 13 DDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSG 192
+ V +++PR I++LVKAG VD+ +K L L KGD I+DGGN Y +T++ K ++
Sbjct: 63 ESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAE 122
Query: 193 TGILYVGMGVSGGEDGARYGP 255
G LY+GMGVSGGE+GAR GP
Sbjct: 123 NGFLYLGMGVSGGEEGARNGP 143
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/61 (54%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDE-PCCDWVGEDGAGHFVKMVHNGIEYGDMQLIC 431
S+MPGG A+ +I++I + A+ +D PC ++G+ G+G+FVKMVHNGIEYGDMQLI
Sbjct: 144 SMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIA 203
Query: 432 E 434
E
Sbjct: 204 E 204
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 505 KANYDSFLIEITRGILKFQDSDGK-YLLPQIRDTAGQKGTGK 627
K +SFL+EIT I +D G +L+ ++ D G KGTGK
Sbjct: 229 KGELESFLVEITADIFGIKDDKGDGHLVDKVLDKTGMKGTGK 270
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 90.6 bits (215), Expect = 1e-18
Identities = 41/81 (50%), Positives = 57/81 (70%)
Frame = +1
Query: 13 DDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSG 192
+ V +++PR I++LVKAG VD+ +K L L KGD I+DGGN Y +T++ K ++
Sbjct: 63 ESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAE 122
Query: 193 TGILYVGMGVSGGEDGARYGP 255
G LY+GMGVSGGE+GAR GP
Sbjct: 123 NGFLYLGMGVSGGEEGARNGP 143
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/61 (54%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDE-PCCDWVGEDGAGHFVKMVHNGIEYGDMQLIC 431
S+MPGG A+ +I++I + A+ +D PC ++G+ G+G+FVKMVHNGIEYGDMQLI
Sbjct: 144 SMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGNFVKMVHNGIEYGDMQLIA 203
Query: 432 E 434
E
Sbjct: 204 E 204
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 505 KANYDSFLIEITRGILKFQDSDGK-YLLPQIRDTAGQKGTGK 627
K +SFL+EIT I +D G +L+ ++ D G KGTGK
Sbjct: 229 KGELESFLVEITADIFGIKDDKGDGHLVDKVLDKTGMKGTGK 270
>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 88.6 bits (210), Expect = 5e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = +1
Query: 16 DMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGT 195
D V ++RPR +++LVKAG VD+ + L + GD IIDGGN Y +T++ E
Sbjct: 65 DFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKK 124
Query: 196 GILYVGMGVSGGEDGARYGP 255
G+LY+GMGVSGGE+GAR GP
Sbjct: 125 GLLYLGMGVSGGEEGARNGP 144
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = +3
Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLICE 434
SLMPGG A+ ++K+I + + A+ +D PC ++GE G+G+FVKMVHNGIEYGDMQLI E
Sbjct: 145 SLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204
Score = 35.5 bits (78), Expect = 0.048
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 505 KANYDSFLIEITRGILKFQDSDGK-YLLPQIRDTAGQKGTGK 627
+ +SFL+EIT I + +D G L+ +I D G KGTGK
Sbjct: 229 RGELESFLVEITSDIFRVKDDYGDGELVDKILDKTGMKGTGK 270
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 437 YHLMKDVIGIEQDEMAKVFDEW 502
Y ++K+V G+ DE+A++F EW
Sbjct: 206 YDVLKNVGGLSNDELAEIFTEW 227
>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 88.6 bits (210), Expect = 5e-18
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = +1
Query: 16 DMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGT 195
D V ++RPR +++LVKAG VD+ + L + GD IIDGGN Y +T++ E
Sbjct: 65 DFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKK 124
Query: 196 GILYVGMGVSGGEDGARYGP 255
G+LY+GMGVSGGE+GAR GP
Sbjct: 125 GLLYLGMGVSGGEEGARNGP 144
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = +3
Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLICE 434
SLMPGG A+ ++K+I + + A+ +D PC ++GE G+G+FVKMVHNGIEYGDMQLI E
Sbjct: 145 SLMPGGSFTAYNNVKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204
Score = 35.5 bits (78), Expect = 0.048
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 505 KANYDSFLIEITRGILKFQDSDGK-YLLPQIRDTAGQKGTGK 627
+ +SFL+EIT I + +D G L+ +I D G KGTGK
Sbjct: 229 RGELESFLVEITSDIFRVKDDYGDGELVDKILDKTGMKGTGK 270
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 437 YHLMKDVIGIEQDEMAKVFDEW 502
Y ++K+V G+ DE+A++F EW
Sbjct: 206 YDVLKNVGGLSNDELAEIFTEW 227
>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/80 (48%), Positives = 53/80 (66%)
Frame = +1
Query: 16 DMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGT 195
D V ++RPR +++LVKAG VD+ + + GD IIDGGN Y +T++ E
Sbjct: 65 DFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISEAEQK 124
Query: 196 GILYVGMGVSGGEDGARYGP 255
G+LY+GMGVSGGE+GAR GP
Sbjct: 125 GLLYLGMGVSGGEEGARNGP 144
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/60 (60%), Positives = 47/60 (78%)
Frame = +3
Query: 255 SLMPGGHPAAWPHIKEIFQAICAKAKDEPCCDWVGEDGAGHFVKMVHNGIEYGDMQLICE 434
SLMPGG A+ +IK+I + + A+ +D PC ++GE G+G+FVKMVHNGIEYGDMQLI E
Sbjct: 145 SLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNGIEYGDMQLISE 204
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 517 DSFLIEITRGILKFQDSDGK-YLLPQIRDTAGQKGTGK 627
+SFL+EIT I + +D G L+ +I D G KGTGK
Sbjct: 233 ESFLVEITSDIFRVKDEFGDGELVDKILDKTGMKGTGK 270
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = -3
Query: 694 NGFPGFSGHRVPGIPGALMPGQFFRYPSVRPYP 596
NG+PG G P PGA+ P RYPS PYP
Sbjct: 121 NGYPGIHGV-AP--PGAMPPHGLLRYPS--PYP 148
>At1g07850.1 68414.m00852 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 560
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 689 FSRI*RSQGPRY---SRGVDARSIFPVPFCPAVSRIWGSKYFPSESWNFKIPLVISIKKE 519
F ++ RS+ R+ S +D SIF C +R W S SW F + ++ I
Sbjct: 377 FPKMKRSRALRHLMSSAVLDPASIFQQSICYDQNRFWSI----SVSWGFVVQIIRGIISP 432
Query: 518 S*FALPTRRIL*PFHLVQYLSH 453
+P+R L F Y+ +
Sbjct: 433 RELEMPSRTFLNWFRKADYIGY 454
>At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 440
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Frame = +1
Query: 76 AVDEFVKKL-IPLLSKGDII----IDGGN-SQYLDTQKWCKELSGTGILYVGMGVSGGED 237
A+D F K P+ S G +I + GN ++ LD KW E + +LY+ G
Sbjct: 209 AIDFFTSKFDFPVYSTGPLIPLEELSVGNENRELDYFKWLDEQPESSVLYISQGSFLSVS 268
Query: 238 GARYGPL*CLVGILLHGRI*KKFSKPYALKLKMNRAVTGSVKMEQAILSKWC 393
A+ + +VG+ G K F +LK+ A+ GS+ ++ WC
Sbjct: 269 EAQMEEI--VVGVREAGV--KFFWVARGGELKLKEALEGSL----GVVVSWC 312
>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
putative similar to SWISS-PROT:Q13183 renal
sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
Length = 540
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 34 KRPRKIVLLVKAGFAVDEFVKK--LIPLLSKGDIIID 138
K P IVLL+ AGFA+ + V+ L +LSKG + ++
Sbjct: 387 KLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLE 423
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,924,959
Number of Sequences: 28952
Number of extensions: 511728
Number of successful extensions: 1332
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -