Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30343
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  

>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 855

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 572 SFMGTGILRRSYCYLKSTITVCF-SVTLNC 486
           SF+G   + RSY  LKST+TV F S TL C
Sbjct: 27  SFIGREEIPRSYNMLKSTLTVIFSSFTLFC 56


>SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 670 GARGKVGKKMPFKPNSRKSQSIVTQHLKKSKINH 569
           G R K G+K  +K   + ++S+  +H +KS I+H
Sbjct: 471 GTRSKGGQKKRYKDTLKGARSLARKHRRKSTIDH 504


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,840,861
Number of Sequences: 59808
Number of extensions: 463724
Number of successful extensions: 802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)