Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30343
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    29   5.4  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    29   5.4  

>Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical
           protein F56C4.2 protein.
          Length = 183

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 548 RRSYCYLKSTITVCFSVTLNCD*YAINSPFTI*ILST 438
           RRSYC+  S    C+S+T++C   A  +P  + I+ T
Sbjct: 84  RRSYCFYNSR---CYSLTMSCHPVATPTPLLLGIILT 117


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 11  IFHEPAMYNVLRIQWSLTANHLNLTCMKKQYNVIFQLL 124
           I  EPA + V   Q+ L   HLN+ C+     ++  LL
Sbjct: 467 IIREPASFKVFGHQFYLLGTHLNIDCVSTSIPLVDALL 504


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 11  IFHEPAMYNVLRIQWSLTANHLNLTCMKKQYNVIFQLL 124
           I  EPA + V   Q+ L   HLN+ C+     ++  LL
Sbjct: 467 IIREPASFKVFGHQFYLLGTHLNIDCVSTSIPLVDALL 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,103,486
Number of Sequences: 27780
Number of extensions: 368958
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)