Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30342
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L218 Cluster: Hypothetical membrane protein; n=1; Pic...    36   0.73 
UniRef50_A0EI68 Cluster: Chromosome undetermined scaffold_98, wh...    35   2.2  

>UniRef50_Q6L218 Cluster: Hypothetical membrane protein; n=1;
           Picrophilus torridus|Rep: Hypothetical membrane protein
           - Picrophilus torridus
          Length = 270

 Score = 36.3 bits (80), Expect = 0.73
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 574 EHTQKIKIFYRTSHWKKFIKI*NERMVYLWHK 669
           EH  ++ + Y TS+WK ++K  N+R + +WH+
Sbjct: 236 EHNIEVPVSYITSYWKNYLKRNNKRSIDVWHQ 267


>UniRef50_A0EI68 Cluster: Chromosome undetermined scaffold_98, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_98, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1270

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
 Frame = +3

Query: 69   NPKMVPGAFITNITKV-----KYYSPRLLNIVTYQAYLFNMTHQALSGVA-----*LIIY 218
            N  ++P  F TNI+K+       +    LN + YQ YLFN T  ++  +       + I 
Sbjct: 947  NISLIPNRF-TNISKIINLLTLNFILGSLNQLDYQVYLFNSTSGSIQQIGYKSYQDISIA 1005

Query: 219  LFTSSKHLNIYNKIVTFKL---ILQFRR-K**NNVLLMKQIHRKPARFQHTNIVLVTNQK 386
            LF SS  +N+ N  + F +   I+ ++  K  NN++    IH+   +  +T + ++ NQ 
Sbjct: 1006 LFNSSIDINLENLGIIFYVQEGIVNYQLFKFRNNLIEFWGIHQLMWKSHYTILYIIYNQA 1065

Query: 387  IIIL 398
             +I+
Sbjct: 1066 FLII 1069


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,486,222
Number of Sequences: 1657284
Number of extensions: 11672334
Number of successful extensions: 26212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26083
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)