Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30342
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    25   0.60 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.4  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   9.7  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   9.7  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = +3

Query: 51  CFYTPINPKMVPGAFITNITKV--KYYSPRLLNIVT----YQAYLFNMTHQALSGVA*LI 212
           CFY      + P +     TK+  K Y   +  I T    Y  Y     +  LSG+  ++
Sbjct: 9   CFYVAKFFAITPSSIYDKPTKLYQKLYPVLMFLIYTITEIYSVYERRYMNAHLSGIQLVV 68

Query: 213 IYLFTSSKHLNIYNKIVT 266
             L   S +LN Y+  VT
Sbjct: 69  RNLLDISLYLNAYHVFVT 86


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 356 HKYSARNKSKNNNSINADNIVFSLE 430
           H Y+ +    NNN  +  N+ FS++
Sbjct: 109 HYYNQKTLQANNNDASNGNLKFSID 133


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 138 LNIVTYQAYLFNMTHQALSGVA*LIIYLFTSSKHLNIYNKI 260
           L+IVT  A L        SGVA +   LF  +K + + +K+
Sbjct: 71  LSIVTQLADLIFSASANASGVATVFFCLFYQNKLIEVISKL 111


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 419 RQYCQHL*NYYFLICYEHYICVL 351
           R+Y       YF   Y +++CV+
Sbjct: 143 REYLAEAVQLYFQFYYTYFLCVI 165


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 589 IKIFYRTSHWKKFIKI 636
           + +FYR   + KFI I
Sbjct: 48  VSVFYRAKDYAKFIHI 63


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 589 IKIFYRTSHWKKFIKI 636
           + +FYR   + KFI I
Sbjct: 48  VSVFYRAKDYAKFIHI 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,836
Number of Sequences: 336
Number of extensions: 3685
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)