Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30342
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    27   2.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   6.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   6.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   7.9  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    25   7.9  

>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = +2

Query: 620 RNSLKFRMKEWYTYGINIGYVQMSE 694
           ++++KF++K+    G+ +G+V+MSE
Sbjct: 151 KSTIKFQLKKVLCLGVAVGHVEMSE 175


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 9   SLPQFTNFKVXPNFCFYTPINPKMVPGAFITNITKVKYYSP 131
           +LPQ+ N    P+   + P+NP     +F+ N+  +++ SP
Sbjct: 456 TLPQYMNDVYNPSGLAFNPVNPN-ANNSFV-NLNLIQFTSP 494


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 314 INETNSQKAGTFSTHKYSARNKSKNNNSINADNIVF 421
           ++ TN+    T ST +Y+AR KS  N   N + +VF
Sbjct: 398 VSSTNTNLEETISTLEYAARAKSIRNKPQN-NQLVF 432


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 605 VPHIGRN--SLKFRMKEWYTYGINIGYVQMS 691
           VP+  R    L  R+ +WYT   + G+VQ+S
Sbjct: 229 VPYHSRTLIDLNIRVGQWYTVSYHEGHVQIS 259


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 15  PQFTNFKVXPNFCFYTPINP 74
           P F N    P +CF +P++P
Sbjct: 182 PHFHNNNYPPPYCFQSPVSP 201


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 620 RNSLKFRMKEWYTYGINIGYVQMSE 694
           ++++KF++K+    G+ +G+V M+E
Sbjct: 151 KSTIKFQLKKVLCLGVAVGHVDMAE 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,207
Number of Sequences: 5004
Number of extensions: 54216
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)