Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30342
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-6|CAB02957.2|  296|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF078792-1|AAC26947.2|  352|Caenorhabditis elegans Serpentine re...    28   7.4  

>Z81063-6|CAB02957.2|  296|Caenorhabditis elegans Hypothetical
           protein F15D3.8 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 478 NIQKEKKKEMKNR*ASFQRKDNIVSI 401
           N++K  KKEM+N  A F++K N + +
Sbjct: 67  NLEKGHKKEMRNMSADFRKKKNEIEM 92


>AF078792-1|AAC26947.2|  352|Caenorhabditis elegans Serpentine
           receptor, class h protein40 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 24  TNFKVXPNFCFYTPINPKMVPGAFITNITKVKYYSPRLLNIVTYQAYLFNMTHQALSGVA 203
           T+F +     F  P+N   +P  +      + YYS  + NI    + +   +H  LS + 
Sbjct: 251 TSFYISMCIQFLIPLNVGYIPNIYWNFSVTIDYYSQEINNI----SVVLLTSHCTLSSIV 306

Query: 204 *LIIYLFTSSKHLN-IYNKIV 263
            + IY       L+ I+NKI+
Sbjct: 307 TIFIYTPYRKFTLDLIFNKIL 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,772
Number of Sequences: 27780
Number of extensions: 297946
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)