Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30342
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 314 INETNSQKAGTFSTHKYSARNKSKNNNSIN 403
           I  TN+Q       +K +A N+  NN + N
Sbjct: 423 IQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 553 SHHNHIIEHTQKIKIFYRTSHW 618
           SHH  +IE  + +K FY   +W
Sbjct: 526 SHHK-LIEIPEDLKYFYEIDNW 546


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 553 SHHNHIIEHTQKIKIFYRTSHW 618
           SHH  +IE  + +K FY   +W
Sbjct: 526 SHHK-LIEIPEDLKYFYEIDNW 546


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 311 IINETNSQKAGTFSTHKYSARNKSKNNNSIN 403
           II+  +++     + +KY+  N + NNN+ N
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYN 344


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 328 ICFINNTLFHYFLLNCNINL 269
           +C  ++T + Y +LNC I++
Sbjct: 158 VCEYDHTWWPYDILNCTIHI 177


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 STHKYSARNKSKNNNSIN 403
           + +KY+  N + NNN+ N
Sbjct: 92  NNYKYNYNNNNYNNNNYN 109


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 STHKYSARNKSKNNNSIN 403
           + +KY+  N + NNN+ N
Sbjct: 92  NNYKYNYNNNNYNNNNYN 109


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 232 DDVKR*IIN*ATPLSAWCVI 173
           DD +R IIN    +SA CVI
Sbjct: 235 DDQQRAIINTLLSISASCVI 254


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 344 TFSTHKYSARNKSKNNNSINAD 409
           T   H+   + KSKNN+  N D
Sbjct: 50  TSQPHQDHNKEKSKNNHHCNQD 71


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 544 DPISHHNHIIEHTQKIKIFYRTSH 615
           DP  HH+  I++   +KI + T H
Sbjct: 315 DP-DHHSTDIQNCDSVKIKFETLH 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,176
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)