Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30341
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 146 3e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 86 6e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 78 1e-15
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 72 8e-14
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.76
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 29 1.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 28 1.8
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 2.3
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.1
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 146 bits (354), Expect = 3e-36
Identities = 61/84 (72%), Positives = 73/84 (86%)
Frame = +2
Query: 2 EIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPR 181
EIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYVPR
Sbjct: 3 EIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPR 62
Query: 182 AILVDLEPGTMDSVRSGPFGQIFR 253
A+LVDLEPGTMD+V+SG FG +FR
Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLFR 86
Score = 130 bits (313), Expect = 3e-31
Identities = 73/175 (41%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Frame = +1
Query: 256 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXX 435
DN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+E+E+CD LQGFQ
Sbjct: 88 DNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGM 147
Query: 436 XXXXXXKIREEYPDRIMNTYSVVPCPK-YQTLSSNHTMRLSQFTS*LKTQTKTYCIRQRG 612
KIREEYPDR+M T+SV P PK T+ + LS ++ +T+CI
Sbjct: 148 GTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQL-VENSDETFCI-DNE 205
Query: 613 SIRHLLPQSQTCPHPPTGEP*PLSFPSQCLVAPI--ALRFPGQLNADLRKIG*KM 771
++ + + P + L+ ++A + + RFPG+LN+DLRK+ M
Sbjct: 206 ALSSIFANTLKIKSPSYDD---LNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNM 257
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 85.8 bits (203), Expect = 6e-18
Identities = 35/83 (42%), Positives = 58/83 (69%)
Frame = +2
Query: 2 EIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPR 181
EI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+PR
Sbjct: 4 EIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPR 63
Query: 182 AILVDLEPGTMDSVRSGPFGQIF 250
AIL+DLEP ++++ S +G ++
Sbjct: 64 AILIDLEPRVVNNILSDTYGSLY 86
Score = 55.2 bits (127), Expect = 1e-08
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 2/162 (1%)
Frame = +1
Query: 280 GAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKI 459
GAGNNWA G Y+ + + ++D++ +E++ D L+GF ++
Sbjct: 99 GAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERL 157
Query: 460 REEYPDRIMNTYSVVPCPKYQTLSSNHTMRLSQFTS*--LKTQTKTYCIRQRGSIRHLLP 633
+ YP +I+ TYSV P Q++S + + L + + ++ H+
Sbjct: 158 NDRYPKKIIQTYSVFP--NSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215
Query: 634 QSQTCPHPPTGEP*PLSFPSQCLVAPIALRFPGQLNADLRKI 759
+P + L + + LR+PG +N DL I
Sbjct: 216 DRLHTQNPTFHQQNQL-VSTVMSASTTTLRYPGYMNNDLVSI 256
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 516 VSDTVVEPYNATLSVHQLVENTD 584
VSD VV+PYN+ L++ +L N D
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNAD 200
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 EIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGKYV 175
EI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GKYV
Sbjct: 3 EIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYV 62
Query: 176 PRAILVDLEPGTMDSVRSGPFGQIF 250
PR+I VDLEP +D VR+GP+ +F
Sbjct: 63 PRSIYVDLEPNVIDQVRTGPYRDLF 87
Score = 60.5 bits (140), Expect = 3e-10
Identities = 29/90 (32%), Positives = 44/90 (48%)
Frame = +1
Query: 256 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXX 435
+ + G+ A NN+A+GHYT G ELVD V D +R+ +++C LQGF
Sbjct: 90 EQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGF 149
Query: 436 XXXXXXKIREEYPDRIMNTYSVVPCPKYQT 525
++ EY + +SV P P+ T
Sbjct: 150 GALLLERLAMEYTKKSKLQFSVYPAPQVST 179
Score = 33.5 bits (73), Expect = 0.035
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 504 PLPKVSDTVVEPYNATLSVHQLVENTD 584
P P+VS +VVEPYN+ L+ H ++ D
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLAD 199
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 602 DNEALYDICFRNLKLVHTHLRVNLNHLV 685
DNE+ YDIC RNL + NLN L+
Sbjct: 205 DNESCYDICRRNLDIERPSYE-NLNRLI 231
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 72.1 bits (169), Expect = 8e-14
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Frame = +2
Query: 2 EIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEASG 163
E++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 3 EVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQ 62
Query: 164 GKYVPRAILVDLEPGTMDSVRSGPFGQIF 250
GK+VPR+I VDLEP +D VR+GP+ +F
Sbjct: 63 GKFVPRSIYVDLEPNVIDQVRTGPYKDLF 91
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +1
Query: 256 DNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXX 435
+ V G+ A NN+A+GHYT G E++DSVL+ +R+ +++C LQGF
Sbjct: 94 EQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGL 153
Query: 436 XXXXXXKIREEYPDRIMNTYSVVPCPKYQT 525
++ EY + +SV P P+ T
Sbjct: 154 GALLLERLNMEYGKKSNLQFSVYPAPQVST 183
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 504 PLPKVSDTVVEPYNATLSVHQLVENTD 584
P P+VS +VVEPYN+ L+ H ++N+D
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSD 203
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 602 DNEALYDICFRNLKLVHTHLRVNLNHLV 685
DNEA YDIC RNL + NLN L+
Sbjct: 209 DNEACYDICRRNLDIERPTYE-NLNRLI 235
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 429 RYGHPPHLKDP*RVPRQNHEHILSSPLPKVSDTVVEPYNATLSVHQLVENTDENLLHSTT 608
R PP + P + N +LSSP SDT P + L++ V + ++H +
Sbjct: 291 RLNSPPFITIPQSIKNTNSNFLLSSP-SLFSDTRTRPASYALALIITVPYEYDEIVHPVS 349
Query: 609 RLYT 620
YT
Sbjct: 350 TYYT 353
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 598 IRQRGSIRHL-LPQSQT-CPHPPTGEP*PLSFPSQCLVAPIALRFPGQLNADLRKIG 762
+R G +RH LP S HPP G+ PSQ L L+ PG ++++G
Sbjct: 415 MRNFGDVRHQKLPTSSPPSQHPPVGQ-----IPSQYLPYQAGLKVPGNTPIPVKQVG 466
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 522 DTVVEPYNATLSVHQLVENTDENLLHSTTRLYTTSASAISNLS 650
D VE A + +Q +EN D NLL RL ++ S ++ L+
Sbjct: 239 DESVEKAAADMLAYQWIENADNNLLELLERLDVSNNSDVAVLA 281
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -1
Query: 717 GNWCHQTL*GKTKWLRFTRRWVWTSLRLRKQMSYRASLSNAVGFRLCFQLAGELRES 547
G W T G +W F W+ SY+AS+SNA+ F+L +LA ES
Sbjct: 150 GRWDSSTCGGGLRWQAFA--WL-------NGYSYKASVSNALLFQLSSRLARFTNES 197
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 298 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 387
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 35 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 136
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 407 PSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPAQSIRHCRRTIQCDSLSSPA 568
PS+A+ P P SSQ S S P S + S A SI ++ + ++SS A
Sbjct: 14 PSIASSFPTVKPFSSQNSTTSNPELSHIEKE-SNASSIIISQQPLSPSNISSAA 66
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 371 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 466
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 450 LKDP*RVPRQNHEHILSSPLPKVSDTVVEPYNATLSVHQLVEN 578
+++P +P+QNHEH SPL + SD + + L V+ V++
Sbjct: 641 VQNPLLMPQQNHEH---SPLVR-SDAALHDHGPLLPVYPDVDS 679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,721
Number of Sequences: 5004
Number of extensions: 62454
Number of successful extensions: 202
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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