Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30341
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 282 AGLSEDEVVRRKICPKGPERTESMVPGSKSTRMARG 175
           AGL+E+EVV  K   + PE   ++   +   R+  G
Sbjct: 62  AGLTEEEVVLAKTIAECPESENTVQKAALVLRLREG 97


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 331 VDSVLDVVRKESESCDCLQG 390
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +3

Query: 342 PRCSPQRIRILRLPTGLPTYTFPRWRHRVRYGHPPHLKDP*RVPRQNHEHILSSPLP 512
           P+  P   R+ R P   P    P +  + R  HP   ++P   P  N    +  P P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 163


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 576 FQLAGELRESHCM 538
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 553 SQFTS*LKTQTKTYCIRQRGSIRHLLPQSQTCPHPP 660
           S F S L      Y I  R S RHLL  ++  P PP
Sbjct: 13  SVFLSLLIPALILYFIYFRISRRHLLELAEKIPGPP 48


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 564  QLVENTDENLLHSTTRLYTTSASAISNLS 650
            Q +  +  ++LHS   +  +SAS ++N++
Sbjct: 932  QTIRLSGHSVLHSAQSVVASSASNVTNVT 960


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,783
Number of Sequences: 438
Number of extensions: 4556
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)