Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30340
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    29   0.63 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   3.4  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   3.4  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    27   4.4  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   5.9  

>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 234 SQSIILSWKY*ISYFYIMYLCPPTIFNYYLI*EICTFLVI--PIYTRAFCL 88
           SQS +LSWK+ ++ ++I   C   +F    I E+   L     +Y RA+CL
Sbjct: 81  SQSSLLSWKFFLTAYFIGAFCNQNLF--LAIHELSHNLGFKKTLYNRAYCL 129


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 693 TIFHQLQAYTIHYRCASMFCN 755
           TI H L  YT+H++C+    N
Sbjct: 18  TIIHALPTYTVHWKCSIQQAN 38


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 509 DGNVPSPLYVLKHLR 465
           +G +P PLYV+ HLR
Sbjct: 789 NGTIPRPLYVISHLR 803


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 584 TFRLSPNSPAGTPQSPTPLPRLLVIDGNVPSPLYVL 477
           T  L PN P    Q P  +P +    G +PSP +++
Sbjct: 539 TIPLQPNIPVLNQQYPVMIPAMEDSRGPLPSPAHIM 574


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 622 NSQNMVTAGYILPSIKNEYFPFYKL----FSISCKLTPSIIDVH 741
           N +N++  G    ++K E   +Y      FS+ C L  + IDVH
Sbjct: 35  NCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVH 78


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 431 YNQGAEGSADVSGGALTRIKAKGRSRL*QEA-GAAVLAIGVCLPENSE 571
           YN+  E S+D   G L+   ++ RSR    A  AAV + G  + E++E
Sbjct: 695 YNENNESSSDTRNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNE 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,609
Number of Sequences: 5004
Number of extensions: 67459
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)