Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30340
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160...    30   2.0  
03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308           29   3.5  
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    29   4.7  
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187...    29   6.2  
04_01_0034 - 401208-402923                                             29   6.2  
02_05_1351 - 35855543-35856751                                         29   6.2  

>02_04_0567 -
           23914330-23914461,23915016-23915136,23915954-23916048,
           23916131-23916301,23917291-23917380,23917636-23918139
          Length = 370

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 623 FNLPIYLRS-QCLRTFRLSPNSPAGTPQSPTPLPRLLVIDGNVPSPLYVLKHLR 465
           FNLP +LRS +C  TF L P  P   P  P P P    ++   PSP +    LR
Sbjct: 20  FNLPPWLRSLRCPFTF-LCPPPPPPPPPPPPPPPPPPPLEVVSPSPRWRRPGLR 72


>03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308
          Length = 228

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 591 PENIQIISEFSGRHTPIANTAAPASCYRRERPFAFI 484
           P  +Q+++  +G + P+A  A+  S YR  R  AF+
Sbjct: 165 PPPVQVLNRLTGSYDPVALGASSLSVYRSRRHQAFL 200


>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 578 RLSPNSPAGTPQSPTPLPRLLVI---DGNVPSP 489
           +++PNSP   P+ P+P P+  ++   D +VP P
Sbjct: 488 QVAPNSPTTLPRQPSPAPQSYLVPPLDEHVPPP 520


>07_03_0244 -
           15715047-15715163,15716672-15716824,15718629-15718748,
           15718830-15719045,15719902-15719968,15720051-15720125,
           15720607-15720698,15721053-15721154,15721642-15721711,
           15721788-15721846,15721947-15722031,15722443-15722520,
           15722627-15722725,15722819-15722910,15725572-15725661,
           15725937-15725995,15727966-15728281,15728627-15728702,
           15729998-15730308,15730577-15730634,15731082-15731092,
           15731247-15731397,15733372-15733778
          Length = 967

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 614 PIYLRSQCLRTFRLSPNSPAGTPQSPTPLPR 522
           P +LR   LR  R +  SPA  P  P+P PR
Sbjct: 10  PTFLREVELRLLRCTLPSPATLPPPPSPPPR 40


>04_01_0034 - 401208-402923
          Length = 571

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 572 SPNSPAGTPQSPTPLPRLLVIDGNVPSP 489
           +P S A TP++P+ + RL+ IDG   SP
Sbjct: 87  APTSEAETPRTPSLVARLMGIDGLPDSP 114


>02_05_1351 - 35855543-35856751
          Length = 402

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 581 FRLSPNSPAGTPQSP---TPLPRLLVIDGNVPSP 489
           F  SPN P  +P  P   TPLPR+     + PSP
Sbjct: 168 FTRSPNPPPPSPSPPIPATPLPRVHPSSSSSPSP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,092,917
Number of Sequences: 37544
Number of extensions: 449211
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)