Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30340
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.68 
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)                     29   6.3  
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 611 IYLRSQCLRTFRLSPNSPAGTPQSPTPLPRLLVIDGNVP 495
           ++ RSQ + +    P+ P G P  P PLP    + G  P
Sbjct: 202 LHQRSQPVHSMEPFPDQPPGPPPGPPPLPDFRTLQGKFP 240


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 545 QSPTPLPRLLVIDGNVPSPLYVLKHLR*RQHFLLLPDCTNR 423
           + P PLP LL  D +  SP++  K L   ++   LPD   R
Sbjct: 337 KKPRPLPELLFTDRDSSSPVFSGKMLVWEEYKTFLPDAVCR 377


>SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)
          Length = 815

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +1

Query: 613 GKLNSQNMVTAGYILPSIKNEYFPFYKLFSISCKLTPSIIDVHRCFATCRKI 768
           G  + +++V+ GY L SI+ +Y+P ++      +LT  I+   +C  TCRK+
Sbjct: 101 GAQDIKDLVSVGYTLASIRQQYWPVWER-----ELTKQIL--KKC-VTCRKL 144


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 24/62 (38%), Positives = 31/62 (50%)
 Frame = -3

Query: 194 TFILCIYVLQLFLIII*YEKSVLS**SQFTLGHSVCHSNVTTYLVMLHVCNGNAFRFKVS 15
           TF L I +L  FL ++ YE  VL   S F       H N+ T  +   +CN N  +FKVS
Sbjct: 70  TFSLTISLLNRFLSLVKYEALVLPD-SAFGGMAPRQHMNMMTIKLDDCLCNVNFTQFKVS 128

Query: 14  DL 9
            L
Sbjct: 129 VL 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,576,693
Number of Sequences: 59808
Number of extensions: 516710
Number of successful extensions: 1320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)