Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30340
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin p...    29   4.2  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    29   4.2  

>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 770 IYWNKPNNLTFNKVFTVLKPFLGPFP 847
           +Y N P NL FN     + PFL PFP
Sbjct: 502 VYQNIPFNLYFNSYTPFVNPFLNPFP 527


>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical protein
            C50H2.1 protein.
          Length = 929

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 368  HESQPVPLRRLRRSLNPYPYSYNQGAEGSADVSGGALTRIKAK--GRSRL*QEAGAAVLA 541
            HE  P P R+LR SLN    +  +  EGSAD   G++           R+   + A+ + 
Sbjct: 833  HEHVPHPRRKLRSSLNRI-LALGRRQEGSADSGRGSIASSAGSRDQNERVSLTSNASSIL 891

Query: 542  IGVCLPENSEII 577
              +  P NS I+
Sbjct: 892  SPLLSPTNSNIL 903


>U80033-1|AAM15607.1|  381|Caenorhabditis elegans Synaptotagmin
           protein 4 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 569 PNSPAGTPQSPTPLPRLLVIDGNVPSPLYVLKHL 468
           P  P G  QSP+PL   L  D + PSP+  L++L
Sbjct: 63  PKGPGGLKQSPSPLQSPLSND-STPSPVVPLQNL 95


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
            repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 368  HESQPVPLRRLRRSLNPYPYSYNQGAEGSADVSGGALTRIKAK--GRSRL*QEAGAAVLA 541
            HE  P P R+LR SLN    +  +  EGSAD   G++           R+   + A+ + 
Sbjct: 833  HEHVPHPRRKLRSSLNRI-LALGRRQEGSADSGRGSIASSAGSRDQNERVSLTSNASSIL 891

Query: 542  IGVCLPENSEII 577
              +  P NS I+
Sbjct: 892  SPLLSPTNSNIL 903


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,952
Number of Sequences: 27780
Number of extensions: 386932
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)