Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30340
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37400.1 68417.m05295 cytochrome P450 family protein similar ...    29   3.0  
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    29   3.0  
At5g44660.1 68418.m05472 expressed protein similar to unknown pr...    29   5.2  
At5g57220.1 68418.m07149 cytochrome P450, putative similar to  C...    28   6.8  

>At4g37400.1 68417.m05295 cytochrome P450 family protein similar to
           cytochrome P450 monooxygenase CYP91A2, Arabidopsis
           thaliana, D78607
          Length = 501

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 620 NLPIYLRSQCLRTFRLSPNSPAGTPQSPT 534
           NLP YL++    TFRL P +P   P+SPT
Sbjct: 342 NLP-YLQNIVSETFRLYPAAPLLVPRSPT 369


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 460 RQRRCFNTYKGEGTFPSITRSRGSGVGDWGVPAGE 564
           R RR F    G G      R  GSG G+WG P  E
Sbjct: 146 RPRRAFERRSGTGRGSDFKRD-GSGRGNWGTPGEE 179


>At5g44660.1 68418.m05472 expressed protein similar to unknown
           protein (pir||T05327)
          Length = 423

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 605 LRSQCLRTFRLSPNSPAGTPQSPTPLPRLL 516
           + S  LR  R S +SP   P SP   PRLL
Sbjct: 379 MESPSLRQVRFSTSSPVSYPTSPAISPRLL 408


>At5g57220.1 68418.m07149 cytochrome P450, putative similar to
           Cytochrome P450 (SP:O65790) [Arabidopsis thaliana];
           Cytochrome P450 (GI:7415996) [Lotus japonicus]
          Length = 491

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 620 NLPIYLRSQCLRTFRLSPNSPAGTPQSPT 534
           NLP YL++    TFRL P +P   P+SP+
Sbjct: 342 NLP-YLQNIVSETFRLCPAAPLLVPRSPS 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,133
Number of Sequences: 28952
Number of extensions: 353583
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)