Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30338
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    32   0.096
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.29 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.51 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.51 
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    28   1.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   6.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.4  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 277 VQSTSTGQRPKARSARTSAHHSPAPALRPAAQNYE*SPALRPASLTP 417
           V S+++   P A+ A ++A  +PAP  +PAA     + ++ P+SL P
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPP 462


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 289 STGQRPKARSARTSAHHSPAPALRPAAQNYE*SPALRPASLTPRHSL-PVPVQKLLAADA 465
           STG++P   S+  +  + PAP   P A     +PAL P     R S  PVP    L   A
Sbjct: 371 STGRQPPPLSSSRAVSNPPAP---PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSA 427

Query: 466 SPS 474
            PS
Sbjct: 428 PPS 430


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +1

Query: 151 ATAIPTVICKP*NTPRPINSPARSRMNDTESSGTAADNLLAVVQSTSTGQRPKARSARTS 330
           +TA+PT   +  +   P NSP+ S  + +  S     +   VV      QR   +   + 
Sbjct: 139 STAVPTTEARNTSITEPANSPSSSSSSASTKSTATTQSADYVVAEHFAPQRNDEQLGNSP 198

Query: 331 AHHSPAPALRPAAQ 372
           A  +  PA   AAQ
Sbjct: 199 ASITSKPATTSAAQ 212


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 196  RPINSPARSRMNDTESSGTAADNLLAVVQSTSTGQRPKARSARTSAHHSPAPALRPAA 369
            RP     ++R N T+++         + Q+T+      A S  TSA  SP+   +P+A
Sbjct: 1025 RPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSA 1082


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 280 QSTSTGQRPKARSARTSAHHSPAPALRPAAQNYE*SPALRPAS 408
           +STST  R +ARS++  A  S +  +  +  +Y+ S  LR +S
Sbjct: 100 KSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSS 142


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 470 PAIDASQTQQQVTSNGPPINIVRKKPIGVQM 562
           PAI      + VTS GP +N +R+  + ++M
Sbjct: 681 PAISKRSLTKPVTSCGPLLNNIRRLTVNLEM 711


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 626  HLCLE*WCVCITALIPF 576
            H CL  WC+ +T+  PF
Sbjct: 1211 HGCLPSWCISLTSAYPF 1227


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 346 APALRPAAQNYE*SPALRPASLTPRHSLPVPVQKLL 453
           +P+L PA QN +  P++  AS        VP+Q++L
Sbjct: 76  SPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVL 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,918
Number of Sequences: 5004
Number of extensions: 69628
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)