Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30338
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33978| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-17)                 31   0.72 
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               30   2.2  
SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)                       29   2.9  
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)                 29   2.9  
SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)                      29   5.1  
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   6.7  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              28   6.7  
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               28   8.9  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               28   8.9  
SB_24153| Best HMM Match : I_LWEQ (HMM E-Value=0.44)                   28   8.9  

>SB_33978| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-17)
          Length = 355

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 436 PVQKLLAADASPSHRRQPDSTTGNQ*RAAHKHRQEEA 546
           P+Q + + D SPS ++  +STTG Q     +H+Q+EA
Sbjct: 323 PLQPIRSGDISPSQQKSVESTTGKQ-----QHQQQEA 354


>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
 Frame = +1

Query: 193 PRPINSPARSRMNDTESSGTAADNLLAVVQSTSTGQRPK----ARSARTSAHHSPAPALR 360
           P PI  P R     +E  G A  +   V   T    RP+    A ++  S    P P  R
Sbjct: 347 PEPIGGPVRG----SEPKGVARADAPPVPARTDQTPRPERPVPAGASPQSRRRRPVPTPR 402

Query: 361 PAAQNYE*SPALRPASLTPRHSLPVPVQKLLAADASPSHRRQPDS 495
                   SP L P       +LP P+   L      S    P+S
Sbjct: 403 RTVHKTTSSPLLDPNQPLRNRTLPQPLSMSLRYQIDESSYSDPES 447


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/78 (30%), Positives = 33/78 (42%)
 Frame = +1

Query: 205 NSPARSRMNDTESSGTAADNLLAVVQSTSTGQRPKARSARTSAHHSPAPALRPAAQNYE* 384
           N+ ARS    + ++GTAA    A   S       +  +A   A  +PAP   PAA     
Sbjct: 58  NAAARSTAPSSSNTGTAAAPAQAFAPSAPLAAPAQVAAAPAPAAAAPAPV--PAAAAPAP 115

Query: 385 SPALRPASLTPRHSLPVP 438
           +PA   A+  P     VP
Sbjct: 116 APAAPSAAAAPAPVRSVP 133



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +1

Query: 271 AVVQSTSTGQRPKARSARTSAHHSP-APALRPAAQNYE*SPALRPASLTPRHSLPVPVQK 447
           A  +ST+        +A  +   +P AP   PA      +PA    +  P  + P P   
Sbjct: 59  AAARSTAPSSSNTGTAAAPAQAFAPSAPLAAPAQVAAAPAPAAAAPAPVPAAAAPAPAPA 118

Query: 448 LLAADASPSHRRQPDSTTGNQ*RAA 522
             +A A+P+  R   ST+ +  R+A
Sbjct: 119 APSAAAAPAPVRSVPSTSPSSVRSA 143


>SB_32444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 599 CITALIPFRPGTASG-RRWASS*RCLWAARYWLPVVESGWRRWLGDASAASN 447
           C++ + P   GT  G R W  S  C+       P+++ GW +W G    +S+
Sbjct: 445 CVSRVSPPVDGTKCGDRHWCISGECVDDGS---PMIDGGWSKWSGYGPCSSD 493


>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
          Length = 338

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 443 RNCWQQ-THRPAIDASQTQQQVTSNGPPINIVRKKPIGVQMLYQVGTVSMLLYTRTIIPD 619
           ++ W Q TH+P++D +      T++G P+++     I +   +Q   +++++    I+  
Sbjct: 193 KSVWDQLTHQPSLDKTNPTAITTASGEPLHVHGTVSIDITCAWQDTHMNVMIPIPIILAL 252

Query: 620 KDDAKNHRHLSATA 661
           K   +    +S+TA
Sbjct: 253 KILNRTKSEISSTA 266


>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
          Length = 314

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +1

Query: 277 VQSTSTGQRPKARSARTSAHHSPAPALRPAAQNYE*SPALRPASLTPRHSLPVPVQKLLA 456
           VQ TS    P   S+      SP P   P A+ Y  SP     S +  +S P P+   + 
Sbjct: 39  VQFTSPQPMPGRNSSPIVPRASPQP---PTARPYGTSPGTSAMSPSNPYSSPSPITHYMV 95

Query: 457 ADASPSH-RRQPDSTTGNQ*RAAHKHRQEEA 546
              +P H    P  + G Q     K+RQ  A
Sbjct: 96  NSPAPYHPMASPAMSPGGQ---VPKYRQSGA 123


>SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = -3

Query: 554 RRWASS*RCLWAARYWLPVVESGWRRWLGDASAASNFCTGTGSEWRGVSDAG 399
           RRW    R  W  R W       W R  G A    N   G G   +G +  G
Sbjct: 4   RRWTRRTRRRWTRRKWRKWTSRRWTRGDGQAGQGGNGQGGDGQAGQGGNGQG 55


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 190 TPRPINSPARSRMNDT-ESSGTAADNLLAVVQSTSTGQ-RPKARSARTSAHHSPAPALRP 363
           TPR    P+ S    + ES+G ++    +  ++TS  +    AR++  +   SPA  + P
Sbjct: 481 TPRAAPIPSFSEWKKSNESTGDSSSGGASPARTTSPARITSPARASSPAGRASPARGVSP 540

Query: 364 AAQNYE*SPALRPASLTPRHSLPV 435
           A++        RPA   PR S PV
Sbjct: 541 ASRGK------RPAPPAPRTSSPV 558


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 561 IWTPMGFFLTMFMGGPLLVTCC*VWLASMAGRCVCCQQFLY 439
           I+ P+G  LT+F     +   C +W+ S+   C  C   LY
Sbjct: 824 IYCPIGSSLTVFNFTNKITQNCTIWITSLQFDCHACANGLY 864


>SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)
          Length = 258

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/90 (22%), Positives = 38/90 (42%)
 Frame = +1

Query: 322 RTSAHHSPAPALRPAAQNYE*SPALRPASLTPRHSLPVPVQKLLAADASPSHRRQPDSTT 501
           RT  +  P PA     QN E +PA    + T ++  P P Q  +     PS  +    + 
Sbjct: 111 RTQQNQEPNPAQNRTQQNQEPNPA---QNRTQQNQEPNPAQNRIQPRTEPSKTQPSTESN 167

Query: 502 GNQ*RAAHKHRQEEAHRRPDAVPGRNGINA 591
             + R   +  + ++  +P+    R+ ++A
Sbjct: 168 KTKNRIQPEPNRAQSGAKPNQDQNRSQLSA 197


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 235 TESSGTAADNLLAVVQSTSTGQRPKARSARTSAHHSPAPALRPAAQNYE*SPALRPASLT 414
           T ++ T A    A  + +ST  R   R   TS+ ++ A + +P+       P+L     T
Sbjct: 103 TSTASTIAQTSTAAPRGSSTEGRTSTRETATSSINTEATSRQPSTATQVSGPSLPMQHST 162

Query: 415 PRHS 426
             HS
Sbjct: 163 EHHS 166


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +1

Query: 295  GQRPKARSAR----TSAHHSPAPALRPAAQNYE*SPALRPASLTPRHSLPVPVQKLLAAD 462
            G+RPKA   R    T   H  A A    A  ++    +RPA   P+H   VP      A 
Sbjct: 1661 GRRPKAAGVRHPMKTQDLHEKALADEALAPLFQ---GVRPADRLPKHPHHVPTPSAYIAK 1717

Query: 463  ASPSHR 480
              PS R
Sbjct: 1718 TDPSTR 1723


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +1

Query: 337 HSPAPALRPAAQNYE*SPALRPASLTPRHSLPVPVQKLLAADASPSHRRQPDSTTGNQ*R 516
           HSPA   R  +++   SP  R  S +PR       ++  +   SP HR     +     R
Sbjct: 214 HSPAHHRRSRSRSRSRSPRRRRRSRSPR-------RRRRSRSPSPHHRSHRSRSRSRSPR 266

Query: 517 AAHKHRQEEAHRR 555
             H   +   HRR
Sbjct: 267 RRHSRSRSPTHRR 279


>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = +1

Query: 196 RPINSPARSRMNDTESSGTAADNLL-AVVQSTSTGQRPKARSARTSAHHSPAPALRPAAQ 372
           R IN    +  N    +G  A  L+    Q++S    P     +T   ++P     P+  
Sbjct: 324 RAINHGTLTSQNSFSLNGPGALELMRGSSQNSSRASTPSPTMGKTLIQYNPVST--PSNT 381

Query: 373 NYE*SPALRPASLTPRHSLPVPVQKLLAADASPSH 477
               +P+  P   TP H+ PV         ++PSH
Sbjct: 382 PPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSH 416


>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 289 STGQRPKARSARTSAHHSPAPALRPAAQNYE*SPALRPASLTPRHSLPVPVQKLLAADAS 468
           + G   +A+S  +++ ++PAP   P A++    P     + TP+  +P  +    AAD +
Sbjct: 425 ANGGSDEAKSTSSNSGNTPAPKPAPDAED---KPKSSSGTSTPKEGVPKTIGSTTAADTT 481


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +1

Query: 418 RHSLPVPVQK-LLAADASPSHRRQPDSTTGN-Q*RAAHKHRQEEAHRRP 558
           RH  P P+    + AD    HRR P  T G       H HR+  A   P
Sbjct: 405 RHPAPSPLTPGTITADTRHHHRRHPAPTPGTITANTRHHHRRHPAPSPP 453


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 370 QNYE*SPALRPASLTPRHSLPVPVQKLLAADASPSH 477
           QNYE  P   P  L    ++PVPV   L  D  P H
Sbjct: 150 QNYEKGPLSEPPPLFTPRTVPVPV---LVRDGQPCH 182


>SB_24153| Best HMM Match : I_LWEQ (HMM E-Value=0.44)
          Length = 563

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 178 KP*NTPRPINSPARSRMNDTESSGTAADNLLAVVQSTSTGQRPK--ARSARTSAHHSPAP 351
           KP +T R      + +   + + G  A      + ST+ G R K   ++  ++AH  PA 
Sbjct: 124 KPASTARSNRQKYKRKTVTSTAHGKTASTAHGKLASTARGNRQKYKGKTVTSTAHGKPAS 183

Query: 352 ALRPAAQNYE 381
             R   Q Y+
Sbjct: 184 TARGNRQKYK 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,551,935
Number of Sequences: 59808
Number of extensions: 588820
Number of successful extensions: 1543
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)