Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30338
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.18 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 294 CACGLHHS*KVISRGSAT-FCIIHSASGRG 208
           C C +    +V+ RG+   FCI  +A+GRG
Sbjct: 478 CNCDIDCINRVVQRGTKMQFCIFRTANGRG 507


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +2

Query: 479  DASQTQQQVTSNGPPINIVRKKPIGVQMLYQVGTVSMLLYTRTIIPDKDDAKNHRHL--- 649
            D  Q   +VT   PP      + +G  + Y++ +        T+   K+D K H HL   
Sbjct: 987  DLDQHTLKVTWKPPPREDWNGEILGYYVGYRLSSSEKPYMFETVDFSKEDGKEH-HLQIM 1045

Query: 650  ---SATAYAIPVTAFS 688
               + T Y++ V AF+
Sbjct: 1046 NLKTYTQYSVVVQAFN 1061


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = -2

Query: 321 GGSCFWPLPCACG---LHH 274
           GGSC+WP     G   LHH
Sbjct: 139 GGSCYWPRGKNLGGTTLHH 157


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 460 DASPSHRRQPDSTTGNQ*RAAHKHRQEEAHRRPDAVPGRNGINAVIH 600
           D  P  RR  +S    +     K+    AHR  D       INAV++
Sbjct: 556 DQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTINAVVN 602


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 460 DASPSHRRQPDSTTGNQ*RAAHKHRQEEAHRRPDAVPGRNGINAVIH 600
           D  P  RR  +S    +     K+    AHR  D       INAV++
Sbjct: 524 DQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTINAVVN 570


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 532 DVYGRPVTGYLLLSLAGV 479
           D Y   V GYLL SL  V
Sbjct: 153 DTYAASVVGYLLYSLGQV 170


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 633 LASSLSGMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMG 520
           +A+S  G+   VY S        SIW+ + FF+ + +G
Sbjct: 404 VAASGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILIG 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,778
Number of Sequences: 438
Number of extensions: 5508
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)