Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30337
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    50   2e-07
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    28   0.92 
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   0.92 
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   1.2  
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    27   1.2  
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.6  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   1.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.9  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   4.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   4.9  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    25   6.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   6.5  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   6.5  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   6.5  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   6.5  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   6.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   8.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.5  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 20/37 (54%), Positives = 29/37 (78%)
 Frame = +3

Query: 255 KGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 365
           KG+R VGGIRAS+YNA+++E+ + L+  +E F K HS
Sbjct: 352 KGYRSVGGIRASLYNAISVEQTRRLIDLLESFAKAHS 388



 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +1

Query: 25  LQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDA 204
           L+++  +GGL  +   + +K+ L+Y+T+++ +  Y + V    RS+MNV FRI       
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDK-HDLYISVVEPAARSRMNVTFRI---EPQE 334

Query: 205 LEKEFLKGAETLGLIQLK 258
           LE EFL  AE   L+QLK
Sbjct: 335 LESEFLAEAEKHHLVQLK 352


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 309 LEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLYCCIN 449
           LE++    +  E+F+K+ S+  +LNL++ Y  F     F+ L+  +N
Sbjct: 405 LEQLSYHFRICEKFFKESSENKMLNLFEDYNEFGLCKSFICLFKRLN 451


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 475 KIDFNYIHIL---IQQYKTTNSK*HTKSIYCLYKFNNIYLE 362
           KI FN I IL   I    + NSK   KS+YC  K   IY++
Sbjct: 188 KILFNAIDILSHEISLIASPNSKKKYKSLYCWRKIFEIYMD 228


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 238 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 152
           K ++P+RI  LR +H+  Q    + FY E
Sbjct: 117 KLRYPNRITILRGNHESRQITQVYGFYDE 145


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 160 KMNVPFRIGCPGDDALEKEFLKGAETLGLIQLKDTETLAV-FVPQYIMQ*P*RRFKLSFS 336
           K NV  ++G  GD ++ K  L      G    + T+TL V F+ + I     R  +++FS
Sbjct: 6   KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISI---RNTEITFS 62

Query: 337 TW 342
            W
Sbjct: 63  IW 64


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 297 NAVTLEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEFVV 431
           +AV  E+++    Y E F K      +L+    Y+L  C++EF V
Sbjct: 9   HAVPREQIRRRYSYFEAFEKNCHIQGILSKRALYMLIPCFMEFAV 53


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 238 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 152
           K ++P RI  LR +H+  Q    + FY E
Sbjct: 104 KIRYPQRITILRGNHESRQITQVYGFYDE 132


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 273 GGIRASIYNAVTLEEVQALVQYMEEFYKKHSK*ILLN 383
           G I A++ N+VTL    +     E++YK H    LLN
Sbjct: 443 GSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLN 479


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 354  KKHSK*ILLNLYKQYILFVCYLEFVVLYCCINICI*LKSILYQ 482
            + H   ++LNL  ++ L + YL+F       ++ + + ++LYQ
Sbjct: 1164 RNHDPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHISTVLYQ 1206


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 391 SNIYFLYVIWNLLFYIVVLIYVYN*N 468
           SN++F ++ W L F +   I++Y+ N
Sbjct: 73  SNLHFFFLFWLLNFILFFRIHLYSCN 98


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 FKLSFSTWRSSIKNIPSKYC*IYTSNIYFLYVIWNL-LFY 435
           F  SF TW+S+ +++P K       + YF ++  N  +FY
Sbjct: 155 FPHSFPTWKSAFRDVPDKDWAKTCLDWYFRFINCNWPIFY 194


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 238 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 152
           K ++P RI  LR +H+       + FY E
Sbjct: 98  KLRYPKRITLLRGNHESRGITQTYGFYSE 126


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 339 MEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLYCCINICI*LKSILYQI 485
           +E F  + +K I+LN       F+C+   + L  CI  CI  + I +++
Sbjct: 174 IETFSTRLNKKIILNTI--VTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 339 MEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLYCCINICI*LKSILYQI 485
           +E F  + +K I+LN       F+C+   + L  CI  CI  + I +++
Sbjct: 174 IETFSTRLNKKIILNTI--VTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 217 FLKGAETLGLIQLKDTETLAVFVPQYIMQ 303
           F+KG + LGL+   D + +A+++    ++
Sbjct: 161 FIKGLDLLGLLDAADYKAIALYITHVYLE 189


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 339 MEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLYCCINICI*LKSILYQI 485
           +E F  + +K I+LN       F+C+   + L  CI  CI  + I +++
Sbjct: 174 IETFSTRLNKKIILNTI--VTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 339 MEEFYKKHSK*ILLNLYKQYILFVCYLEFVVLYCCINICI*LKSILYQI 485
           +E F  + +K I+LN       F+C+   + L  CI  CI  + I +++
Sbjct: 174 IETFSTRLNKKIILNTI--VTSFICWSNAIALGFCIIACILWRMIFFKV 220


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 319 FKLSFSTWRSSIKNIPSKYC*IYTSNIYFLYV 414
           F  SF TW S  +N+P K         YF Y+
Sbjct: 159 FPQSFPTWISVYRNVPEKAWANRCVEWYFRYI 190


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 330 VQYMEEFYKKHSK*ILLNLYKQYILF 407
           VQYM+ +  + SK + +  YK+YI F
Sbjct: 290 VQYMKLWVFRKSKRVAIEDYKEYIRF 315


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 356  KTFQVNIVKFIQAIYTFCMLFG 421
            KT   + + FI+ + TFC++FG
Sbjct: 3081 KTSYFSCLHFIRFLNTFCLIFG 3102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,733
Number of Sequences: 5004
Number of extensions: 42372
Number of successful extensions: 124
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)