Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30337
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   29   1.6  
SB_12747| Best HMM Match : DUF952 (HMM E-Value=3.2)                    29   1.6  
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_9877| Best HMM Match : DUF952 (HMM E-Value=1.5)                     28   5.0  
SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19)                   27   6.6  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_38723| Best HMM Match : rve (HMM E-Value=4.7e-13)                   27   6.6  
SB_28795| Best HMM Match : AP2 (HMM E-Value=3.9)                       27   6.6  
SB_7067| Best HMM Match : TrkA_C (HMM E-Value=10)                      27   6.6  
SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)           27   8.8  
SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   27   8.8  
SB_53008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_38783| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_4599| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_3095| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = +1

Query: 43  NGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCP-GDDALEKEF 219
           N  +  M + +  K+++IY+ ++ SNGFY+  V K  RS+MNV  RIG P G+  LEK+F
Sbjct: 99  NETVHEMERRSIIKSTMIYDVMDNSNGFYWGQVKKEARSRMNVVLRIGGPDGNQDLEKKF 158

Query: 220 LKGAETLGLIQLK 258
           ++ A T G+IQLK
Sbjct: 159 VEEAATKGMIQLK 171



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = +3

Query: 204 LRKRILEGC*DFGTYSAKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 365
           L K+ +E     G    KGHR VGGIR S+YNA+ LEEV+ LV++M +F + +S
Sbjct: 154 LEKKFVEEAATKGMIQLKGHRSVGGIRISLYNAIHLEEVEKLVKFMVKFQETNS 207


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 406  KSIYCLYKFNNIYLECFL*NSSMY*TRA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQH 227
            + IY       ++ + F  ++S+   R   SS+    Y +   PPT+    +E +P   H
Sbjct: 1326 RPIYYFQGVTALHAKLFKGSASIDRVRKWVSSQPVGGYTQTPPPPTTYAHFSEQIPNRIH 1385

Query: 226  PSRILFL 206
             S +LFL
Sbjct: 1386 QSDLLFL 1392


>SB_12747| Best HMM Match : DUF952 (HMM E-Value=3.2)
          Length = 187

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 406 KSIYCLYKFNNIYLECFL*NSSMY*TRA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQH 227
           + IY       ++ + F  ++S+   R   SS+    Y +   PPT+    +E +P   H
Sbjct: 47  RPIYYFQGVTALHAKLFKGSASIDRVRKWVSSQPVGGYTQTPPPPTTYAHFSEQIPNRIH 106

Query: 226 PSRILFL 206
            S +LFL
Sbjct: 107 QSDLLFL 113


>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 264 RDVGGIRASIYNAVTLEEVQALVQYME 344
           RDV  I+A+I NA +L+EVQ L + ++
Sbjct: 689 RDVAAIKAAIANAKSLDEVQGLERLLK 715


>SB_9877| Best HMM Match : DUF952 (HMM E-Value=1.5)
          Length = 258

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFLR 203
           SS+    Y +   PPT+    +E +P   H S +LFL+
Sbjct: 53  SSQPVGGYTQTPAPPTTYAHFSEQIPNRIHQSDLLFLQ 90


>SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           SS+    Y +   PPTS    +E +P   H S +LFL
Sbjct: 514 SSQPAGGYTQTAPPPTSYAHFSEQLPNRIHQSDLLFL 550


>SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19)
          Length = 722

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           SS+    Y +   PPTS    +E +P   H S +LFL
Sbjct: 462 SSQPAGGYTQTAPPPTSYAHFSEQLPNRIHQSDLLFL 498


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 381 NLYKQYILFVCYLEFVVLYCC 443
           ++Y QY L +CY  +++L CC
Sbjct: 676 SIYSQYQLLICY--YIILSCC 694


>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFLRHHHQG 188
           SS+    Y +   PPT+    +E +P   H S +LFL    +G
Sbjct: 675 SSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFLLTDRRG 717


>SB_38723| Best HMM Match : rve (HMM E-Value=4.7e-13)
          Length = 253

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 349 NSSMY*TRA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           ++SM   R   SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 39  SASMDRVRRWGSSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFL 86


>SB_28795| Best HMM Match : AP2 (HMM E-Value=3.9)
          Length = 375

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFLRHHHQG 188
           SS+    Y +   PPT+    +E +P   H S +LFL    +G
Sbjct: 224 SSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFLLTDRRG 266


>SB_7067| Best HMM Match : TrkA_C (HMM E-Value=10)
          Length = 176

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 20  SSQPVGGYTQTPPPPTTYAHFSEQIPNRTHQSDLLFL 56


>SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1247

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 316  SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
            SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 1008 SSQPVGGYTQTTPPPTNYAHFSEQIPNRIHQSDLLFL 1044


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 238 KSQHPSRILFLRHHHQGNQF*MAHSFYCEHF*LQGHNKNHLIAQLCCR 95
           K++ P RI  LR +H+  Q    + FY E    Q    N    + CC+
Sbjct: 98  KAKWPDRITLLRGNHESRQITQVYGFYDE---CQSKYGNANAWRYCCK 142


>SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 328 RA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           R   SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 570 RTWVSSQPAGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFL 610


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 349  NSSMY*TRA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
            ++S+   R   SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 917  SASINRVRKWVSSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFL 964


>SB_53008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 349 NSSMY*TRA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           ++S+   R   SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 319 SASINRVRKWVSSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFL 366


>SB_38783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 316 SSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFLR 203
           SS+    Y +   PPT+    +E +P   H S +LFL+
Sbjct: 158 SSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFLQ 195


>SB_4599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 373 IYLECFL*NSSMY*TRA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           + + C   ++S+   R   SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 170 VAVHCRHGSASIDRVRKWVSSQPVGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFL 225


>SB_3095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 328 RA*TSSRVTALYIEARIPPTSLCPLAE*VPKSQHPSRILFL 206
           R   SS+    Y +   PPT+    +E +P   H S +LFL
Sbjct: 49  RGWVSSQPAGGYTQTPPPPTTYAHFSEQIPNRIHQSDLLFL 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,709
Number of Sequences: 59808
Number of extensions: 287348
Number of successful extensions: 770
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)