Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30337
         (504 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ062790-1|AAY56663.1|  364|Drosophila melanogaster unknown prot...   124   7e-29
AY119560-1|AAM50214.1|  364|Drosophila melanogaster GM02605p pro...   124   7e-29
AE014297-4350|AAF56874.1|  364|Drosophila melanogaster CG11899-P...   124   7e-29
AE013599-523|AAM68870.1| 1020|Drosophila melanogaster CG18654-PB...    30   1.5  

>DQ062790-1|AAY56663.1|  364|Drosophila melanogaster unknown
           protein.
          Length = 364

 Score =  124 bits (299), Expect = 7e-29
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +1

Query: 4   IYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 183
           IY+MG V +WI+RNGG+ GM++LA  K+ LIY+TI QSNGFYY PV  NVRS+MNVPFRI
Sbjct: 242 IYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRI 301

Query: 184 G-CPGDDALEKEFLKGAETLGLIQLK 258
           G   GDDALEKEFL  AE  G+IQLK
Sbjct: 302 GSASGDDALEKEFLSKAEAEGMIQLK 327



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 28/53 (52%), Positives = 30/53 (56%)
 Frame = +3

Query: 204 LRKRILEGC*DFGTYSAKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKH 362
           L K  L      G    KGHR VGGIRAS+YNAVTL E Q L   M  FYK +
Sbjct: 310 LEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362


>AY119560-1|AAM50214.1|  364|Drosophila melanogaster GM02605p
           protein.
          Length = 364

 Score =  124 bits (299), Expect = 7e-29
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +1

Query: 4   IYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 183
           IY+MG V +WI+RNGG+ GM++LA  K+ LIY+TI QSNGFYY PV  NVRS+MNVPFRI
Sbjct: 242 IYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRI 301

Query: 184 G-CPGDDALEKEFLKGAETLGLIQLK 258
           G   GDDALEKEFL  AE  G+IQLK
Sbjct: 302 GSASGDDALEKEFLSKAEAEGMIQLK 327



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 28/53 (52%), Positives = 30/53 (56%)
 Frame = +3

Query: 204 LRKRILEGC*DFGTYSAKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKH 362
           L K  L      G    KGHR VGGIRAS+YNAVTL E Q L   M  FYK +
Sbjct: 310 LEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362


>AE014297-4350|AAF56874.1|  364|Drosophila melanogaster CG11899-PA
           protein.
          Length = 364

 Score =  124 bits (299), Expect = 7e-29
 Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +1

Query: 4   IYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 183
           IY+MG V +WI+RNGG+ GM++LA  K+ LIY+TI QSNGFYY PV  NVRS+MNVPFRI
Sbjct: 242 IYVMGLVFKWIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFRI 301

Query: 184 G-CPGDDALEKEFLKGAETLGLIQLK 258
           G   GDDALEKEFL  AE  G+IQLK
Sbjct: 302 GSASGDDALEKEFLSKAEAEGMIQLK 327



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 28/53 (52%), Positives = 30/53 (56%)
 Frame = +3

Query: 204 LRKRILEGC*DFGTYSAKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKH 362
           L K  L      G    KGHR VGGIRAS+YNAVTL E Q L   M  FYK +
Sbjct: 310 LEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQLANLMLAFYKNN 362


>AE013599-523|AAM68870.1| 1020|Drosophila melanogaster CG18654-PB,
           isoform B protein.
          Length = 1020

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 295 YIEARIPPTSLCPLAE*VPKSQHPSRILFLRHHHQGNQF 179
           Y E  +PPT++CP      +S + +      HHHQ   F
Sbjct: 312 YSELIVPPTAICPAVLDRQRSVNQAHKKSQMHHHQATHF 350


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,556,249
Number of Sequences: 53049
Number of extensions: 432390
Number of successful extensions: 1114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)