Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30337
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...    84   5e-17
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    28   4.4  
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    27   5.8  
AL033514-29|CAA22090.1|  333|Caenorhabditis elegans Hypothetical...    27   5.8  
AB070573-1|BAB63947.1|  294|Caenorhabditis elegans Ser/Thr prote...    27   5.8  
Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
 Frame = +1

Query: 4   IYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 183
           IY    VL+WI+  GGL+ + +L  +K+ +IY+ I+ SNGFY+  V K  RS MNV FRI
Sbjct: 247 IYTTNLVLKWIKSKGGLQAIYELNLQKSGMIYDIIDNSNGFYHCAVDKRYRSIMNVCFRI 306

Query: 184 GCP-GDDALEKEFLKGAETLGLIQLK 258
           G P G+D LE++FLKG+    +I LK
Sbjct: 307 GGPSGNDELEEKFLKGSIERNMISLK 332



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 27/54 (50%), Positives = 37/54 (68%)
 Frame = +3

Query: 204 LRKRILEGC*DFGTYSAKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 365
           L ++ L+G  +    S KGHR VGGIRAS+YNA+++EE Q L  +M EF K H+
Sbjct: 315 LEEKFLKGSIERNMISLKGHRSVGGIRASLYNAISVEETQVLATWMNEFQKLHN 368


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 372 ILLNLYKQYILFVCYLEFVVLYC 440
           +L N+ K ++ F C+ EF   YC
Sbjct: 539 LLANMSKPHVAFACFKEFTYRYC 561


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 384 NLTIFTW-NVFYRTPPCTERELEPP 313
           N+T+FT+  V Y  PP ++R  +PP
Sbjct: 103 NITVFTFLGVPYAEPPTSQRRFKPP 127


>AL033514-29|CAA22090.1|  333|Caenorhabditis elegans Hypothetical
           protein Y75B8A.30 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 238 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 152
           K+++P R++ +R +H+  Q    + FY E
Sbjct: 126 KARYPDRMMLIRGNHESRQITQVYGFYDE 154


>AB070573-1|BAB63947.1|  294|Caenorhabditis elegans Ser/Thr protein
           phosphatase protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 238 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 152
           K+++P R++ +R +H+  Q    + FY E
Sbjct: 87  KARYPDRMMLIRGNHESRQITQVYGFYDE 115


>Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 85  LSLLPIETFLLILHSFESIVILDPLYRW 2
           L L+ +E ++ +LH    + +L P +RW
Sbjct: 128 LVLVSLEKYIAVLHPLSGLKLLTPEHRW 155


>Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 85  LSLLPIETFLLILHSFESIVILDPLYRW 2
           L L+ +E ++ +LH    + +L P +RW
Sbjct: 128 LVLVSLEKYIAVLHPLSGLKLLTPEHRW 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,726
Number of Sequences: 27780
Number of extensions: 231495
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)