Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30337
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 79  KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 183
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 232 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 266


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 79  KKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRI 183
           ++ASL     + +  F +  + K  RS + +PF +
Sbjct: 227 RRASLFCGLQKYTRSFAHQSINKEARSNLYLPFHL 261


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 SNIYFLYVIWNLLFYIVVLIYV 456
           +NIY++ ++   LFY++V + +
Sbjct: 111 TNIYYIIILAWALFYLLVSLRI 132


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 391 SNIYFLYVIWNLLFYIVVLIYV 456
           +NIY++ ++   LFY++V + +
Sbjct: 164 TNIYYIIILAWALFYLLVSLRI 185


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 333 QYMEEFYKKHSK*ILLNLYKQYIL 404
           ++ ++FY++ +K  LLN Y ++ L
Sbjct: 43  RFSKDFYRQDTKNNLLNAYVRFKL 66


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -1

Query: 402 VYIACINLTIFTWNVFY 352
           VY+ C+ + + +W  F+
Sbjct: 251 VYVPCVLIVVLSWVSFW 267


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 27  TMDSKEWRIRRNVSIGNKESLTYLQHN*AIK 119
           TM   +WR  +   +  K  L YL+   A++
Sbjct: 31  TMSKIQWRKPKPAMVEEKTQLRYLEELNALR 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,154
Number of Sequences: 438
Number of extensions: 3018
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)