Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30335
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1K2A6 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_Q1CWW6 Cluster: Sensor protein; n=1; Myxococcus xanthus...    33   9.7  
UniRef50_P30628 Cluster: Probable vacuolar proton translocating ...    33   9.7  

>UniRef50_Q1K2A6 Cluster: Putative uncharacterized protein; n=1;
           Desulfuromonas acetoxidans DSM 684|Rep: Putative
           uncharacterized protein - Desulfuromonas acetoxidans DSM
           684
          Length = 319

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 472 LRIVVKHVFIYNISLMKSYCANEWKRS*NQSICTSNQTPTLH 347
           +R   KH+ +   + + S CA +W+ S NQ++ ++NQ P  H
Sbjct: 32  MRYFSKHMLLILTTFLLSGCAKQWQPSWNQAVSSNNQQPVEH 73


>UniRef50_Q1CWW6 Cluster: Sensor protein; n=1; Myxococcus xanthus DK
           1622|Rep: Sensor protein - Myxococcus xanthus (strain DK
           1622)
          Length = 419

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 712 WANEEVAGRPVEDCANLLDTGQLGPVVMTRLGECHGMKPREHFVGL 575
           W  E V G  +EDC  ++DTG+   VV+    E  GM+ R   VG+
Sbjct: 66  WEQEGVRGLRLEDCVRVVDTGEPVSVVLCITRE--GMEARFRAVGM 109


>UniRef50_P30628 Cluster: Probable vacuolar proton translocating
           ATPase 116 kDa subunit a; n=7; Caenorhabditis|Rep:
           Probable vacuolar proton translocating ATPase 116 kDa
           subunit a - Caenorhabditis elegans
          Length = 905

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 469 VVSSRNFNYFKTFMRIIKLSFINQKLFL-SLSIYLCI 576
           ++S +NF YFK+ +  IK  FI Q +FL S+ IYLCI
Sbjct: 591 LLSYQNFIYFKSDLD-IKYMFIPQMIFLSSIFIYLCI 626


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,915,348
Number of Sequences: 1657284
Number of extensions: 12638333
Number of successful extensions: 27320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27317
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)