Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30335
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   3.7  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   4.9  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   4.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   6.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   6.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.6  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   8.6  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -1

Query: 454 HVFIYNISLMKSYCANEWKRS*NQSICTSNQTPTLHNSAAPSFTVLFRVALGILFMTQQ* 275
           H F+ +++ + S  A EW+R  N     SN   T  ++  P     FR  L    MT   
Sbjct: 707 HSFLKHLNTIDSQKAQEWRREINNQFQVSNINSTDRDTKQPKMHD-FRQPLHPNPMT--- 762

Query: 274 STVKSQPPKYYFCMSR-FLWFENNN 203
            T+K +     F   +  L+++NNN
Sbjct: 763 -TLKRKGQHNSFSYDKSTLFYDNNN 786


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 463 VVKHVFIYNISLMKSYCANEWKRS*NQSICTSN 365
           +++H F Y+ S+  SYC  E K+S ++ I  +N
Sbjct: 323 LIRHAFHYDDSIYLSYCP-ELKKSKHKGIALAN 354


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 728 PLIAHLGK*GGSRTTCRGLREFARYRPVGTGG 633
           PL +HL     S   CRGL EF+  +P+G  G
Sbjct: 674 PLSSHLHH--VSNDVCRGLLEFSTGKPLGPKG 703


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 430  LMKSYCANEWKR 395
            L+ SYC+NEW R
Sbjct: 1316 LLSSYCSNEWNR 1327


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 43  KNLLSIAKIPSNY*IQEILTKIPLIFLIIDTVQPNF 150
           KNLLS+    S Y +++ L+ I L   +I    P F
Sbjct: 640 KNLLSVTDPESEYLLKQCLSNISLSNSVISLSNPKF 675


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 616 PQALS*PPVPTGL-YLANSRNPRQVVRLPPHLPKWAINGPLSG 741
           P++ + PPVPTG   L  S N  Q     P +P  A+ G  +G
Sbjct: 67  PKSFAAPPVPTGAPSLPTSSNNTQQAEERPSMP--ALGGLFAG 107


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 297 IPNATRNRTVKLGAAELCNVGV 362
           +P+ +R RTV LGA  L ++GV
Sbjct: 179 LPSESRLRTVSLGAGVLLDMGV 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,709
Number of Sequences: 5004
Number of extensions: 56048
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)