Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30335
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0543 - 4271380-4272218,4272258-4272873                           29   5.1  
06_03_0956 + 26296744-26297382,26297595-26297669,26298147-262983...    29   5.1  
08_02_0349 - 16077063-16077824,16077891-16078102,16078142-160782...    28   6.8  
03_01_0554 - 4130608-4130741,4130899-4131952                           28   6.8  

>12_01_0543 - 4271380-4272218,4272258-4272873
          Length = 484

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = -3

Query: 710 GK*GGSRTTCRGLREFARYRPVGTGGYDKAWGMSWNE 600
           G  G SR  C   RE A Y      GY    G  WN+
Sbjct: 63  GSTGHSRNDCPETREEAMYMGNNNNGYRPQGGQGWNQ 99


>06_03_0956 +
           26296744-26297382,26297595-26297669,26298147-26298341,
           26298426-26298559,26298713-26298779,26298985-26299043,
           26299204-26299321,26299613-26299726,26299855-26299986,
           26300076-26300492,26300904-26300954,26301303-26301373,
           26302067-26302151,26302258-26302410,26302522-26302596,
           26302755-26302844,26303953-26304000,26304081-26304195,
           26305356-26305459,26305582-26305692
          Length = 950

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 728 PLIAHLGK*GGSRTTCRGLREFARYRPVGTGG 633
           P+ AHL   G     CRG+ E+A  RP+G  G
Sbjct: 536 PMHAHLSHLGSD--LCRGVLEYAEGRPLGKSG 565


>08_02_0349 -
           16077063-16077824,16077891-16078102,16078142-16078204,
           16078439-16078865,16078870-16078919,16079006-16079360
          Length = 622

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 710 GK*GGSRTTCRGLREFARYRPVGTGGYDKAWGMSWNE 600
           G  G +R  C   RE A Y    + GY    G  WN+
Sbjct: 234 GNTGHTRNNCPETREEAMYMGNNSSGYRPQGGQGWNQ 270


>03_01_0554 - 4130608-4130741,4130899-4131952
          Length = 395

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 553 SLSIYLCISPQSARVVSFHDIPQALS*PPVP 645
           +LS YL ISP S R    +D+P+A+S  PVP
Sbjct: 342 TLSKYLKISPGSFRDWKVNDLPRAIS-KPVP 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,115,489
Number of Sequences: 37544
Number of extensions: 325958
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)