Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30335
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_2334| Best HMM Match : p450 (HMM E-Value=0)                         29   4.0  
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)                28   6.9  

>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 674 LREFARYRPVGTGGYDKAWGMSWNETTRALC 582
           LR +ARYR  GTG  + +W  +  +TTR  C
Sbjct: 436 LRVYARYRTKGTGKENSSWQQA-KQTTRDEC 465


>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
          Length = 498

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 115 IFLIIDTVQPNFRLFRFSIQLRNIKYY 195
           +FL++      F++FRF IQ  NIKY+
Sbjct: 228 MFLMLPFASVLFKIFRFLIQNNNIKYF 254


>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 475 SSRNFNYFKTFMRIIKLSFINQKLFLSLSIYLCISPQSARVVS 603
           +SR + Y K   RI+K   ++ +  L   +YLC+SPQ   V +
Sbjct: 3   TSRRWKYLK---RILKFRHMDFEFALWQMLYLCVSPQKVIVTN 42


>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 634 PPVPTGLYLANSRNPRQVVRLPPHLPKWAINGPLS 738
           PP P   +L+NS +P   + L    P+W+ N P S
Sbjct: 604 PPPPPVHFLSNSCSPGDPLVLERPPPRWSSNSPYS 638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,981,297
Number of Sequences: 59808
Number of extensions: 385759
Number of successful extensions: 1465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)