Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30335
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 616 PQALS*PPVPTGLYLANSRNPRQVVRLP--PHLPKWAINGP 732
           P ++S PP P+   +  + N + + R+P  P +P + +  P
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVP 799


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 219 GLKIIITFIIFDVS*LNRKTKKTEVWLNCVY 127
           GL ++IT +I +V      T K   W+  ++
Sbjct: 310 GLSVVITIVILNVHYRKPSTHKMAPWVRKIF 340


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYN 99


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYN 99


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 75  RSREPKIISSLSNRTIHNNNNYKYN 99


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYN 99


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYN 99


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYN 99


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 265 KSQPPKYYFCMSRFLWFENNNYVYN 191
           +S+ PK    +S      NNNY YN
Sbjct: 308 RSREPKIISSLSNKTIHNNNNYKYN 332


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 335 SKLYCSISGSIRNPVHD 285
           SK Y + S S+RN  HD
Sbjct: 207 SKKYATSSNSLRNRTHD 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 651 PVSSKFAQSSTGRPATSSFAQ 713
           P S+    S  G P +++FAQ
Sbjct: 889 PASTPGCSSKNGEPTSAAFAQ 909


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,625
Number of Sequences: 438
Number of extensions: 3792
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)