Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30335
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    28   7.5  
At5g63450.1 68418.m07965 cytochrome P450, putative                     27   9.9  

>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 728 PLIAHLGK*GGSRTTCRGLREFARYRPVGTGG 633
           P+  HL   G     CRG+ EFA  RP+G  G
Sbjct: 597 PMPPHLNHLGSD--LCRGVLEFAEGRPMGISG 626


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 656 YRPVGTGGYDKAWGMSWNE 600
           Y P G G  +K WG  W+E
Sbjct: 395 YFPYGMGRMEKVWGKDWDE 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,726
Number of Sequences: 28952
Number of extensions: 277373
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)