Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30332
         (756 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SPD0 Cluster: Predicted protein; n=1; Nematostella ve...    36   0.82 
UniRef50_A4VD21 Cluster: Putative uncharacterized protein; n=2; ...    34   4.4  
UniRef50_A5PLB8 Cluster: Zgc:165515 protein; n=2; Danio rerio|Re...    33   5.8  
UniRef50_Q17C32 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  

>UniRef50_A7SPD0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 284

 Score = 36.3 bits (80), Expect = 0.82
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +2

Query: 434 FYSYPNFSVARQRYEIRRKFVSVKAGERNMCIYLKRTCLDVTNVTGRVKNSGNVIWNVTS 613
           F++     ++   Y + +     + GE NM  Y ++ C  VT VT RVK+ G    + + 
Sbjct: 46  FHTSAPVMLSSNAYTVHKSDTVNRVGEANMRFYGQQLCAAVTLVTERVKDDGTSTTSTSC 105

Query: 614 LSYCLS 631
            S C+S
Sbjct: 106 NSQCIS 111


>UniRef50_A4VD21 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1678

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -2

Query: 296 FFTISLHLLRGIYTNSVLSAKCPFSPNVALCFDHISSANQQPYFTQLTFNLIYEKQTNC* 117
           F  + L L+RG Y N +L      +P++ L  ++ S++  Q   TQ+TF ++ EK T   
Sbjct: 804 FQLVKLTLMRGTYYNPILFY---IAPSLTLDLNN-STSPIQTKSTQITFTMLVEKTTG-- 857

Query: 116 LFIQQ--EGVL 90
           LF++Q  EGV+
Sbjct: 858 LFVKQAFEGVI 868


>UniRef50_A5PLB8 Cluster: Zgc:165515 protein; n=2; Danio rerio|Rep:
           Zgc:165515 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 325

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 535 KTHLFRCYEC--NWESEELW*CYLECHESKLLFVCVDCDSRF 654
           K   F+C  C  ++ SE ++ C+++CH  +  + C  C   F
Sbjct: 263 KKRTFKCQVCGKDFSSENVFNCHMKCHRIEKPYTCAQCQRNF 304


>UniRef50_Q17C32 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 430

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 266 GIYTNSVLSAKCPFSPNVALCFDHISSANQQPYFTQLTFNLIYEKQT 126
           G+  + VL  KCP++PN   C+  ++  +++ YF Q+   +   ++T
Sbjct: 329 GLADDFVLEIKCPYTPNTHACYIDVNKLSRK-YFAQIQLQMHMTRKT 374


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,901,730
Number of Sequences: 1657284
Number of extensions: 11234434
Number of successful extensions: 25357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25348
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)