Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30332
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   6.7  
SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces...    25   8.8  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 SIPVFTTPTESNLKSHHVFYSYPNFSVARQRY-EIRRKFVSVKAGERNM 523
           ++P++  PTE+N     +   YP   V+R  Y + + K    KA  + +
Sbjct: 603 NVPMYGPPTENNEYCEEISEKYPITPVSRFAYAKTKLKSTCAKASRKRL 651


>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +2

Query: 422 SHHVFYSYPNFSVARQRYEIRRKFVSVKAGERNMCIYLKRTCLDVTNVTGRVKNS 586
           SH  + S+           +   F   K  +  +C+Y + +C     V G+V NS
Sbjct: 41  SHREYLSFTLSDAVENSVRVEDTF---KRSDDGLCVYSELSCTRCNEVIGKVYNS 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,565
Number of Sequences: 5004
Number of extensions: 51697
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)