Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30332
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)                36   0.047
SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)                 36   0.047
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)                  31   1.3  
SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)                      31   1.3  
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)               30   1.8  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)                        29   5.4  

>SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)
          Length = 318

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 473 YEIRRKFVSVKAGERNMCIYLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYCLS 631
           Y + +     + GE NM  Y ++ C  VT VT RVK+ G    + +  S C+S
Sbjct: 91  YTVHKSDTVNRVGEANMRFYGQQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143


>SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)
          Length = 159

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 473 YEIRRKFVSVKAGERNMCIYLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYCLS 631
           Y + +     + GE NM  Y ++ C  VT VT RVK+ G    + +  S C+S
Sbjct: 91  YTVHKSDTVNRVGEANMRFYGQQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143


>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
          Length = 1069

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 470 RYEIRRKFVSVKAGERNMCIYLKRTCLDVTNVTGRVKNSGNV 595
           R + +  +V      R MC YL+++C D +N   R  ++GNV
Sbjct: 443 RCDEKISWVIPSGSPRRMCFYLEKSCFDASNCDNRC-STGNV 483


>SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)
          Length = 862

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +1

Query: 418 EVTSCLLLLPKLFSSK------ATIRDSSQICFCKSGRTEHVYLPKTHLFRCYECNWE 573
           E++SC++ +P  FS K      + I ++  I + K       Y+P   +  CY+C+WE
Sbjct: 358 EISSCVVKVPT-FSGKVKKVQYSLINNTLDITWQKPDGIPDKYIPGVSVSWCYQCDWE 414


>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
          Length = 487

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 547 FRCYECNWE--SEELW*CYLECHESKLLFVCVDCDSRFR*H*LACFDRQRRHI-SFPGSC 717
           F C  C  +  S++   C+L+ H  +L + C  CD RF     + FD + RH    P  C
Sbjct: 56  FVCQHCGKKLASKKTLKCHLQHHTGELPYKCRFCDKRFG-KSNSLFDHENRHTGELPFKC 114

Query: 718 SCKVFCERA 744
              V C +A
Sbjct: 115 ---VVCGKA 120


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 308 AWYTFFTISLHLLRGIYTNSVLSAKCPFSPNVALCFDHISSANQQP 171
           A +TFF  ++   RG YTN+V+   C    N A+C    SS N  P
Sbjct: 3   ATFTFFFWAVTFFRGKYTNNVMFCSC--VDNHAVCLK--SSPNYSP 44


>SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)
          Length = 306

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 618 LRLVTFQITLPEFFTLPVTFVTSKQVRF 535
           LR  ++ + L E FT+PV+ V+S+Q  F
Sbjct: 122 LRATSYNVKLTECFTVPVSVVSSEQPAF 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,807
Number of Sequences: 59808
Number of extensions: 379368
Number of successful extensions: 945
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)