Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30332
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 464 RQRYEIRRKFVSVKAGERNMCIYLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYC 625
           + RY+  +KF+ V+    N C+ L RT    +   G  KN G+++  +     C
Sbjct: 509 KTRYDSLKKFLCVECPIPNQCVNL-RTLAGKSKDGGENKNLGSIVLKIVLQMIC 561


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 478 DSSQICFCKSGRTEHVYLPKTHLFRCYECN-WESEELW-*CYLECH 609
           ++  + FC    T   Y+ + H + CY CN  ESE +   C + CH
Sbjct: 787 ENMDLNFCTYKSTGRAYVTQ-HWYNCYTCNMMESEGVCSVCAINCH 831


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,225
Number of Sequences: 27780
Number of extensions: 294492
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)