Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30332
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 259 ILIQYLAQNVHSHRTSLYVLITSVQQ 182
           ILI+ L  NVH+H  +++ +I S  +
Sbjct: 46  ILIKDLFDNVHNHIQNIFKIIKSTNE 71


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 259 ILIQYLAQNVHSHRTSLYVLITSVQQ 182
           ILI+ L  NVH+H  +++ +I S  +
Sbjct: 29  ILIKDLFDNVHNHIQNIFKIIKSTNE 54


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 299 TFFTISLHLLRGIYTNSVLSAKC 231
           TFF +S+ L+   +    +S KC
Sbjct: 8   TFFFLSVILITSYFVTPTMSIKC 30


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 340 DLKPTTKVKTVLGIHSLQFLYIYFAESILIQYLAQNVHSHRTSLYVLITSVQQI 179
           ++ P+T +   L    L F  I    S++I  +  NVH  + S + +   V++I
Sbjct: 286 EIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVHYRKPSTHKMAPWVRKI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,056
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)