Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30332
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    28   7.7  
At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    28   7.7  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    28   7.7  
At2g33470.2 68415.m04103 glycolipid transfer protein-related sim...    28   7.7  
At2g33470.1 68415.m04102 glycolipid transfer protein-related sim...    28   7.7  

>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 473 YEIRRKFVSVKAGERNMCIYLKR 541
           Y + +KF+  K GE+  C+Y K+
Sbjct: 285 YNVTKKFMVFKEGEKPSCVYTKK 307


>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1009

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 533 LKRTCLDVTNVTGRVKNSGNVIWNVTSLS 619
           L+  CLD  N+TG++ +S   + NVT L+
Sbjct: 240 LRELCLDRNNLTGKIPSSFGNLKNVTLLN 268


>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 533 LKRTCLDVTNVTGRVKNSGNVIWNVTSLS 619
           L+  CLD  N+TG++ +S   + NVT L+
Sbjct: 240 LRELCLDRNNLTGKIPSSFGNLKNVTLLN 268


>At2g33470.2 68415.m04103 glycolipid transfer protein-related
           similar to phosphoinositol 4-phosphate adaptor protein-2
           (GI:14165198) [Homo sapiens]; similar to Glycolipid
           transfer protein (GLTP) (Swiss-Prot:Q9JL62) [Mus
           musculus]; similar to Glycolipid transfer protein (GLTP)
           (Swiss-Prot:Q9NZD2) [Homo sapiens]
          Length = 202

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 407 ESNLKSHHVFYSYPNFSVARQRYEIRRKFVSVKAGERNMCIYLKRTCLD 553
           +  LK  H + +   FS+A +    R+KF+ V +G  N+   ++R C +
Sbjct: 131 QKTLKKWHGWLASSTFSMALKLAPDRKKFMDVISGSGNIQADMERFCAE 179


>At2g33470.1 68415.m04102 glycolipid transfer protein-related
           similar to phosphoinositol 4-phosphate adaptor protein-2
           (GI:14165198) [Homo sapiens]; similar to Glycolipid
           transfer protein (GLTP) (Swiss-Prot:Q9JL62) [Mus
           musculus]; similar to Glycolipid transfer protein (GLTP)
           (Swiss-Prot:Q9NZD2) [Homo sapiens]
          Length = 202

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 407 ESNLKSHHVFYSYPNFSVARQRYEIRRKFVSVKAGERNMCIYLKRTCLD 553
           +  LK  H + +   FS+A +    R+KF+ V +G  N+   ++R C +
Sbjct: 131 QKTLKKWHGWLASSTFSMALKLAPDRKKFMDVISGSGNIQADMERFCAE 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,737
Number of Sequences: 28952
Number of extensions: 259437
Number of successful extensions: 574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)