Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30331
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.0  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   8.0  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    25   8.0  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 548  LSRYLPHDTYITFSELNY 495
            +S+Y   DTY TF  LNY
Sbjct: 1150 ISKYKIKDTYATFQTLNY 1167


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 22  RKFIGIFWTNFRYIYISFFCIVCYLVIVEHCFKK 123
           + ++G  WT +   ++ FF  +C L+ ++ C+ +
Sbjct: 247 KSYLGWRWTEYITSFMGFFSTLC-LLFMKECYSR 279


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 542 RYLPHDTYITFSELNYNISF 483
           R +PH T+ TFS++  NI++
Sbjct: 20  RIIPHATFPTFSQIPCNINY 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,576
Number of Sequences: 5004
Number of extensions: 44853
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)