Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30331
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 43  WTNFRYIYISFFCIV 87
           W++F Y++   FCI+
Sbjct: 115 WSHFPYVFGEAFCII 129


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 EEYTRCLLQRTNIYITEYVFN 324
           ++++RC++     +IT+Y+ +
Sbjct: 115 QKFSRCVIDYVKFHITQYMIS 135


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 272 QDVCYKEQIFILQNMY 319
           QDVC+ +  FI++ +Y
Sbjct: 79  QDVCFNDLKFIIEFVY 94


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 522 SVMRQISTEFLAGSSQWMLGS 584
           S  R I  EFL   S W +G+
Sbjct: 640 SACRDIPEEFLRPESGWAIGA 660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,842
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)